1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caacaatggtgttgatgataaaaatgatgacaatggcaacgatgataattttggtggtggttgtaatgatgcaaattgatgaaaattttatgtccgacagAAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTAATGCAACTGATTTCACTTCCAAGACGAAGGGTCAGGACAGAAAGCAATG
species | Glycine max |
transcript | GLYMA10G43020.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAG AAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTAEST: gi|15201703|gb|BI425012.1|BI425012
genomic: GGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGgtatgatttt ... tgtccgacagAAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTA
EST: GGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAG AAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTAEST: gi|20813995|gb|BQ298473.1|BQ298473
genomic: GGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGgtatgatttt ... tgtccgacagAAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTA
EST: GGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAG AAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTAEST: gi|6848153|gb|AW350443.1|AW350443
genomic: GGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGgtatgatttt ... tgtccgacagAAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTA
EST: GGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAG AAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTAEST: gi|15204129|gb|BI426897.1|BI426897
genomic: GGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGgtatgatttt ... tgtccgacagAAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTA
EST: GGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAG AAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTA
genomic: GGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGgtatgatttt ... tgtccgacagAAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTA
taattttggtggtggttgtaatgatgcaaattgatgaaaattttatgtccgacagAAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTAATGCAACTGATTTCACTTCCAAGACGAAGGGTCAGGACAGAAAGCAATG
aattgat putative branch site (score: 4)
aaattgatgaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacaatggtgttgatgataaaaatgatgacaatggcaacgatgataattttggtggtggttgtaatgatgcaaattgatgaaaattttatgtccgacagAAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTAATGCAACTGATTTCACTTCCAAGACGAAGGGTCAGGACAGAAAGCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - -ggtgttg
- - - - - - - - -ataaaaa
- - - - - - - - - - - - tgatgac
- - - - - - - - - - - - - - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca