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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttatcatgaatcatgtgccactcctatcccacctcaagcctggaatattgcttatctctttgaactaatcttttttaattaatcttttttctttctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAAGCAGCAATGCTTCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGC

Basic information

species Glycine max
transcript GLYMA10G40390.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G40390.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G49970.1 (Arabidopsis thaliana), 3'ss of exon 5
----------------------------------------------------gtaagtttttatcatgaatcatgtgcc--actcctatcccacctcaagcctggaatattgcttatctctttgaactaatcttttttaattaatc-ttttttctttctgcctga------agTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAAGCAGCAATGCTTCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGC
                                                    | |  |  || |  |||    |||  |  | |  | |  |     | |    | | ||  | ||| |    |   | ||  |  |    | |   |||||| ||| |   ||       |||||  |||| ||||||| || ||| | |||||||||||||| ||||||||||||||||||||||| || || || | ||| ||||||||||| ||||| |
gtaagtgattttactgaaactatctacatttttcttctgattgtacaaacacgaagttccttttgctgatgtttgtcactgattattgtttcgatagatggtatgcaaataacctatgtagcagctttgattctcatcgcctcactgttttttatttttatgtggcgtattagTATTGCAAATCAGATGTATACACTATCAATTGTGGCATGGCTTTTGGTCAAGCAGCAATGCTTCTTTCTCTCGGGAAAAAAGGTTATCGTGCCGTACAAC

upper sequence: GLYMA10G40390.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0091g00700.t01 (Vitis vinifera), 3'ss of exon 5
-gtaagtttttatcatgaatcatgtgccactcctatcccacctcaagcctggaatattgcttatctctttgaactaatcttttttaattaatcttttttctttctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAAGCAGCAATGCTTCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGC
 |  |||| || | ||      |  |    |  ||    | ||     |    || | || |    |||| || | | | | | ||||  |||| ||| || |||||||||||||   |||  | || || ||||| ||||| ||||||| ||||| ||||||||||||||||||||| ||  ||||| | |||||||| |||| | ||||||
tgctagttgtttttataggatctcagaagttttta----atctttgatcc---atttggcctg---ctttaaatttaacatgtgtaat--atctgttt-ctatctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAGCAGCAATGCTTCTATCAGTTGGAGCCAAGGGTTACCGTGGTCTACAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163921554|gb|EH039313.1|EH039313
EST:     AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCT                         TATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
genomic: AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCTgtaagttttt ... ctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
EST: gi|5760477|gb|AI965840.1|AI965840
EST:     AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCT                         TATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
genomic: AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCTgtaagttttt ... ctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
EST: gi|193521422|gb|FK481653.1|FK481653
EST:     AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCCGATATGATGTCT                         TATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
genomic: AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCTgtaagttttt ... ctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
EST: gi|193547391|gb|FK501888.1|FK501888
EST:     AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCCGATATGATGTCT                         TATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
genomic: AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCTgtaagttttt ... ctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
EST: gi|209699127|gb|BW656167.1|BW656167
EST:     AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCT                         TATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
genomic: AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCTgtaagttttt ... ctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
EST: gi|15204639|gb|BI427407.1|BI427407
EST:     AGAAACTGAGGCATATTCCATAGCTGATATGATGTCT                         TATGTCAAAGCAGATGTCTATACTGTGAATTGTGGCATGGCATTTGGTCAA
genomic: AGAAACTGAGGCATATTCCATAGCTGATATGATGTCTgtaagttttt ... ctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
EST: gi|22541066|gb|BU090909.1|BU090909
EST:     AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCT                         TATGTCAAAGCAGATGTTTATACTGCGAATTGTGGCATGGCATTTGGTCAA
genomic: AGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCTgtaagttttt ... ctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
EST: gi|22541300|gb|BU091143.1|BU091143
EST:     GAAACTGAGGCATATTCCATAGCTGATATGATGTCT                         TATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA
genomic: GAAACTGAGGCATATTCCATAGCTGATATGATGTCTgtaagttttt ... ctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttatctctttgaactaatcttttttaattaatcttttttctttctgcctgaagTATGTCAAAGCAGATGTTTATACTGTGAATTGTGGCATGGCATTTGGTCAAGCAGCAATGCTTCTGTCGCTTGGAACAAAGGGTTATCGTGCTGTACAGC
                   tcttttttaattaatc  CT-rich tract
         tttgaactaatctttt  TA-rich tract