Sequence
atgc intronic sequence ATGC exonic sequencegtaaatgctgactttcttttggttgtggggggatctatttttgtttacttgttagttttgaacctgaattgttttttgggttgcaaatcttctctcggcagATGTGGAGACAAATGAGTGTTTGGAGAATAATGGTGGTTGTTGGCAGGATAAAGTAGCTAACATCACCGCATGCAAG
Basic information
species | Glycine max |
transcript | GLYMA10G40340.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G40340.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G14740.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaaatgctgac--tttcttttggttgtggggggatctatttttgtttacttgttagttttgaacctgaattgttttttgggttgcaaatcttctctcggcagATGTGGAGACAAATGAGTGTTTGGAGAATAATGGTGGTTGTTGGCAGGATAAAGTAGCTAACATCACCGCATGCAAG
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-ttgatgcccacagctgcctgtgctcatacctgaaccaccttatcctagcttatcaaataaatgtttggaatgtattgtaaacttc--ttttacaatttacagATGTGGAGTCAAACGAGTGCTTAGATAACAATGGTGGTTGTTGGCAAGATAAATCAGCCAACATAACTGCTTGCAAG
upper sequence: GLYMA10G40340.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 3'ss of exon 5
-------------gtaaatgctgactttcttttggttgtggggggatctatt------tttgtttacttgttagttttgaacctgaattgttttttgggttgcaaatcttctctcggcagATGTGGAGACAAATGAGTGTTTGGAGAATAATGGTGGTTGTTGGCAGGATAAAGTAGCTAACATCACCGCATGCAAG
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gtaagcttttaccataagt-tagatactaagttcggtatatccaaatctcttgattgactcgcttgctcatcagttttccttctaatctatttttttaatgg--attcttttcctggcagATGTGGAGACAAATGAATGCCTGGATAATAATGGTGGTTGCTGGCAAGATAAAACAGCCAACATCACTGCATGCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193321258|gb|FK284484.1|FK284484EST: AAACTACCGAACCAGCTG-TTGTTTGAGCAGTG ATGTGGAGACAAATGAGTGTTTGGAGAATAATGGTGGTTGTTGGCAGGATA
genomic: AAACTACCGAACCAGCTGTTTGTTTGAGCAGTGgtaaatgctg ... ctctcggcagATGTGGAGACAAATGAGTGTTTGGAGAATAATGGTGGTTGTTGGCAGGATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttgttagttttgaacctgaattgttttttgggttgcaaatcttctctcggcagATGTGGAGACAAATGAGTGTTTGGAGAATAATGGTGGTTGTTGGCAGGATAAAGTAGCTAACATCACCGCATGCAAG
tcttctctc CT-rich tract
aattgtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatgctgactttcttttggttgtggggggatctatttttgtttacttgttagttttgaacctgaattgttttttgggttgcaaatcttctctcggcagATGTGGAGACAAATGAGTGTTTGGAGAATAATGGTGGTTGTTGGCAGGATAAAGTAGCTAACATCACCGCATGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG