1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgataatcaaatagtgtatcgtgattattgtgtcattctttaattatatttgccactaagttgtaaatttgtaattattgagtgtctatgttacagGGCTGAACTAGAAACCAGAGATGAGAGCTATGATGTGATAATTGGCGACTTGGCAGACCCAATTGATGGAGGTCCTTGTTATAAACTTTACACCAAGTCC
species | Glycine max |
transcript | GLYMA10G39440.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGAAGCATTCCGTGATCAGAGACTTGAGGTCGTGATCAACGACGCCAG GGCTGAACTAGAAACCAGAGATGAGAGCTATGATGTGATAATTGGCGGCTTEST: gi|192295039|gb|FG986758.1|FG986758
genomic: AAGGAAGCATTCCGTGATCAGAGACTTGAGGTCGTGATCAACGACGCCAGgtttgataat ... tatgttacagGGCTGAACTAGAAACCAGAGATGAGAGCTATGATGTGATAATTGGCGACTT
EST: AAGGAAGCATTCCGTGATCAGAGACTTGAGGTCGTGATCAACGACGCCAG GGCTGAACTAGAAACCAGAGATGAGAGCTATGATGTGATAATTGGCGACTTEST: gi|151411311|gb|EV281122.1|EV281122
genomic: AAGGAAGCATTCCGTGATCAGAGACTTGAGGTCGTGATCAACGACGCCAGgtttgataat ... tatgttacagGGCTGAACTAGAAACCAGAGATGAGAGCTATGATGTGATAATTGGCGACTT
EST: AAGGAAGCATTCCATGATCAGAGACTTGAGGTCGTGATCAACGACGCCAG GGCTGAACTAGAAACCAGAGATGAGAGCTACGATGTGATAATTGGCGACTTEST: gi|298183097|gb|HO028360.1|HO028360
genomic: AAGGAAGCATTCCGTGATCAGAGACTTGAGGTCGTGATCAACGACGCCAGgtttgataat ... tatgttacagGGCTGAACTAGAAACCAGAGATGAGAGCTATGATGTGATAATTGGCGACTT
EST: AAGGAAGCATTCCGTGATCAGAGACTTGAGGTCGTGATCAACGACGCCAG GGCTGAACTAGAAACCAGAGATGAGAGCTATGATGTGATAATTGGCGACTT
genomic: AAGGAAGCATTCCGTGATCAGAGACTTGAGGTCGTGATCAACGACGCCAGgtttgataat ... tatgttacagGGCTGAACTAGAAACCAGAGATGAGAGCTATGATGTGATAATTGGCGACTT
aattatatttgccactaagttgtaaatttgtaattattgagtgtctatgttacagGGCTGAACTAGAAACCAGAGATGAGAGCTATGATGTGATAATTGGCGACTTGGCAGACCCAATTGATGGAGGTCCTTGTTATAAACTTTACACCAAGTCC
ctttaat putative branch site (score: 4)
taagttgtaaatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgataatcaaatagtgtatcgtgattattgtgtcattctttaattatatttgccactaagttgtaaatttgtaattattgagtgtctatgttacagGGCTGAACTAGAAACCAGAGATGAGAGCTATGATGTGATAATTGGCGACTTGGCAGACCCAATTGATGGAGGTCCTTGTTATAAACTTTACACCAAGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG