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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtatgttgtttaattacttcattaaactttggaattttgctattgagcctctgatgtttccaaatactctttttaatgtgaatcatctatcatgcttcttgttccttttgtctttccctttattcttattattactaatgaaccctctggatatcctcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG

Basic information

species Glycine max
transcript GLYMA10G39370.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39370.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G094255_T01 (Zea mays), 3'ss of exon 5
gtagtgtatgttgtttaattacttcattaaactttggaattttgctattgagcctctgatgtttccaaatactctttttaatgtgaatcatctatcatgcttcttgttccttttgtctttccctttattcttattattactaatgaaccctctggatatcctcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG
                                                                 ||   | | | || | ||| |||    |      |||  ||      ||||     |||  | |    |||  |  || |   | | |     |  |  |    || |||| ||||| |||||||||||  |||||||||| ||||| ||||| |||||||| |  |||
-----------------------------------------------------------------cagtcattttgttcattgtcaatgcgatgcagccctttctgca----ttgtaaactcctgcagttaacttac-agaaaagtttcatttattcgttttggtcc-cagCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAG

upper sequence: GLYMA10G39370.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G22425.2 (Arabidopsis thaliana), 3'ss of exon 5
gtagtgtatgttgtttaattacttcattaaactttggaattttgctattgagcctctgatgtttccaaatactctttttaatgtgaatcatctatcatgcttcttgttccttttgtctttccctttattcttattattactaatgaaccctctggatatcctcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG
                                                     ||||  |   |||    | | | ||   |  |  | |||| |  |  |  ||||          ||     | |||   | | || | ||  ||     |  |  |    |||| |||||||||||||| || ||||| ||  ||||||| || ||||||||||| |||||||| | ||||
--------------------------------------------------gttctctctttgctcctggaattgtcttcttttgggtttatctgtgttattcgttgt----------ttagtaatcattgaaagtgttgccaa--aaattgtttaacctttcgatttgtagTTGGTGGAGCACTTTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCCGGCAG

upper sequence: GLYMA10G39370.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G14910.1 (Arabidopsis thaliana), 3'ss of exon 5
gtagtgtatgttgtttaattacttcattaaactttggaattttgctattgagcctctgatgtttccaaatactctttttaatgtgaatcatc-tatcatgcttcttgttccttttgtctttccctttattc-ttattattactaatgaaccctctggatatcctcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG
                                                                        ||||   | |  | ||  |  ||||  | || | | |  || |    ||  |||| ||  |||  || |||||   || || |       | |||||  |||||||||| || |||||||| ||  ||||||| || ||||||||||| |||||||| |  |||
----------------------------------------------------------------------gttcttcacatttagtattttagtatccagtttttcggtttttctagtgttttctttgtttgttaaaatcactaaatgactcttt------tcccattt--agTTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAG

upper sequence: GLYMA10G39370.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0020g03430.t01 (Vitis vinifera), 3'ss of exon 5
gtagtgtatgttgtttaattacttcattaaactttggaattttgctattgagcctctgatgtttccaaatactctttttaatgtgaatcatctatcatgcttcttgttccttttgtctttccctttattcttattattactaatgaaccctctggatatcc-tcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG
                                                                            | |||    ||||||   | ||  |   | ||   ||    |||   | |  | ||| | |  |||||||| |   | ||| |   |||| | |||||||||||||| || ||||| ||  ||||||| || || || ||||||||||||||||  |||
------------------------------------------------------------------------gacatctaaaaaaaatcatacctaatcttaggtattggattctcatttgtttatccttttaatttatctaatgaaactcattgatttttatcatatttagTTGGTGGAGCACTTTTTCCAGTCTTTGGTGAATACTTCAGGCATGACACTTCACATTCGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttccctttattcttattattactaatgaaccctctggatatcctcatttatagTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAG
                     tactaat  putative branch site (score: 1)
                                          tcctcattt  putative PPT
       tttattcttattatta  TA-rich tract