1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gataacttgcataatttgaaattaaagatgttaagatccacatatttacttttgtgatattgctaacttcataattggtgttccgaattgttttttacagATAAGATGGTGGAGTATCCTCTGCAATATAGGGAGAAAGGGAGCATAGCTCGTGATGCTG
species | Glycine max |
transcript | GLYMA10G38970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGTCCTCGTTCCTGTTGATACTACCAATCCTTCAGGTTGCTCAAGCAG ATAAGATGGGGGAGTATCCTCTTGCAATATAGGGAGAAAGGGAGCATAGCTEST: gi|193545393|gb|FK499952.1|FK499952
genomic: GATGTCCTCGTTCCTGTTGATACTAC-AATCCTTCAGGTTGCTCAAGCAGgtagcaagtg ... ttttttacagATAAGATGGTGGAGTATCCTCT-GCAATATAGGGAGAAAGGGAGCATAGCT
EST: GGATGTCCTCGTTCCTGTTGATACTACAATCCTTCAGGTTGCTCAAGCAG ATAAGATGGTGGAGTATCCTCTGCAATATAGGGAGAAAGGGAGCATAGCTC
genomic: GGATGTCCTCGTTCCTGTTGATACTACAATCCTTCAGGTTGCTCAAGCAGgtagcaagtg ... ttttttacagATAAGATGGTGGAGTATCCTCTGCAATATAGGGAGAAAGGGAGCATAGCTC
ttacttttgtgatattgctaacttcataattggtgttccgaattgttttttacagATAAGATGGTGGAGTATCCTCTGCAATATAGGGAGAAAGGGAGCATAGCTCGTGATGCTG
tgctaac putative branch site (score: 1)
ttgtttttt putative PPT
aattgttttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataacttgcataatttgaaattaaagatgttaagatccacatatttacttttgtgatattgctaacttcataattggtgttccgaattgttttttacagATAAGATGGTGGAGTATCCTCTGCAATATAGGGAGAAAGGGAGCATAGCTCGTGATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - -tgcataa
- - - - - - - - - aaattaaa
- - - - - - - - - - - - - - - - - - -ccacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attggtg