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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaatcttattttattgatgcattttcatccttttttttatattaattcttttattagtttagtctacattgtaaacgcttacacgattatgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCAAATGACCATCTCCCTGCAAG

Basic information

species Glycine max
transcript GLYMA10G38940.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252055|gb|BG362958.1|BG362958
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|120493118|gb|EH221285.1|EH221285
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|19270789|gb|BM887045.1|BM887045
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|15813895|gb|BI786170.1|BI786170
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|22522682|gb|BU081493.1|BU081493
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|209708652|gb|BW678829.1|BW678829
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|192318385|gb|FK006505.1|FK006505
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|7591166|gb|AW706904.1|AW706904
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTAGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|7042440|gb|AW472334.1|AW472334
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAT                         GCTATGCGTTATTTTGTTGGTGAGCCAGGTTTG-ACTCCACACAAT
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAG-TTTGGACTCCACACAAT
EST: gi|7041921|gb|AW471815.1|AW471815
EST:     CTGCTGGAATTTATCATCGCTGTACACTAGATGAGAGCAACTACATTAAG                         GCTGTGCGTTGTTGTGTTGGTGAGCCAGGTTGGACTCCACACAATCGTGCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|9902326|gb|BE611294.1|BE611294
EST:     CTGCTGGAATTTATCATCGGTCTACACTAGATGAGAGCCACTACATTAAG                         GCTTTGCAGTTATTT-GTTGGTGAGCCAGTTTGTACTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGC-GTTTTTTTGTTGGTGAGCCAGTTTGGACTCCA
EST: gi|27426192|gb|CA937712.1|CA937712
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAAT
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAAT
EST: gi|254339056|gb|GR847773.1|GR847773
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|193337272|gb|FK303324.1|FK303324
EST:     TTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCG-TTTTTTGTTGGTGAGTCAGTTTGGACTCCACACAATCGTCCA
genomic: -TGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|207798267|gb|GD769503.1|GD769503
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGTTTTTT-GTTGGTGAGCCAGTTTG
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTG
EST: gi|7283509|gb|AW596116.1|AW596116
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGTNGTTTTGTTGGTGAGCCAATTTTGACTCCACACAATCCTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|15285900|gb|BI469791.1|BI469791
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|120497212|gb|EH225379.1|EH225379
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|23726129|gb|BU761046.1|BU761046
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGNNNNNNNGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
EST: gi|8282521|gb|BE020012.1|BE020012
EST:     CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAG                         GCTTTGCGTTNTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA
genomic: CTGCTGGAATTTATCATCGCTTTACACTAGATGAGAGCAACTACATTAAGgtattggttg ... tgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttttattagtttagtctacattgtaaacgcttacacgattatgatgtgcagGCTTTGCGTTTTTTTGTTGGTGAGCCAGTTTGGACTCCACACAATCGTCCAAATGACCATCTCCCTGCAAG
     tttattagtttagt  TA-rich tract