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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcagctagtgtcaacttgtagctcttccagattatgatggtctaaataacaccaatataggtcatacatatcacactgttagttctatttctgcagtggttgtctattgaattttcttgttgtttctgtgacagAGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTCTATAAACGACTTGATGACTTGGCTTCTAAGCATGCCTGCACTCCTTCAC

Basic information

species Glycine max
transcript GLYMA10G38900.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38900.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0020g04130.t01 (Vitis vinifera), 3'ss of exon 5
-----------------gtaatgcagctagtgtcaacttgtagctcttccagattatgatggtctaaataacaccaatataggtcatacatatcacactgttagttctatttctgcagtggttgtctattgaattttcttgttgtttctgtgacagAGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTCTATAAACGACTTGATGACTTGGCTTCTAAGCATGCCTGCACTCCTTCAC
                   |||  || || | | ||  |       |  | |  |  | |  | | | |       ||   ||  |   | |||  |   ||  ||     |  | |   ||| | ||   | |  |  ||   || |||  ||||| ||||||||| |||||||| ||||| ||||| ||||||||||| ||| | |||   || |||||  |  ||||| | || |||| |||||||| | | |
gtcagtaactatagataaaaatttag-taatttgaatataggttcttctccgtctgagttttttttacttcttttgatg--ggcaaagaacatcg-atcatttttttagcattggaatcagttattta--aattcatactgacattcctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATATATGCCCGCCTTGAGAAACTGGCTGCAAAACATGGCTGCACTCTTCCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017488|gb|CX704230.1|CX704230
EST:     TTTTTGCAGGAAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTG                         AGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC
genomic: TTTTTGCAGGAAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTGgtaatgcagc ... tctgtgacagAGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC
EST: gi|151407405|gb|EV277220.1|EV277220
EST:     TTTTTGCAG-AAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTG                         AGTATGCATCCCAG-TTCACGGGAGAAAATTTGGAGAAGA-CAAGCTTTTC
genomic: TTTTTGCAGGAAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTGgtaatgcagc ... tctgtgacagAGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC
EST: gi|58018266|gb|CX705008.1|CX705008
EST:     TTTTTGCAGGAAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTG                         AGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC
genomic: TTTTTGCAGGAAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTGgtaatgcagc ... tctgtgacagAGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC
EST: gi|6846802|gb|AW349092.1|AW349092
EST:     TTTTTGCAGGAAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTG                         AGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC
genomic: TTTTTGCAGGAAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTGgtaatgcagc ... tctgtgacagAGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC
EST: gi|31310343|gb|CD395546.1|CD395546
EST:     TTTTTGCAGGAAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTG                         AGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC
genomic: TTTTTGCAGGAAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTGgtaatgcagc ... tctgtgacagAGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC
EST: gi|4291783|gb|AI441811.1|AI441811
EST:     TTTTTGCAGGAAAGGCAGAGGTAGAGACTTTGCCTAGTCAGAGCTTGCTG                         AGTATGCATCCCAGGCTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC
genomic: TTTTTGCAGGAAAGGCAGTGGTAGAGACTTTGCCTAGTCAGAGCTTGCTGgtaatgcagc ... tctgtgacagAGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttctatttctgcagtggttgtctattgaattttcttgttgtttctgtgacagAGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTCTATAAACGACTTGATGACTTGGCTTCTAAGCATGCCTGCACTCCTTCAC
                                ttttcttgttgtttct  CT-rich tract
                         tattgaattttctt  TA-rich tract