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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaattaattctctgttttgaatgccatttcaatcagatatataaaaaatatctcgatgcctgccaacatttgaatctttgttgtactgtacagGTTCTTTGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGAGGCGAATCTACTGAATCTAGTTTTCCTTCACTTATTTCTGCTATTTGTTCCACTGGC

Basic information

species Glycine max
transcript GLYMA10G38860.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338005|gb|CO981871.1|CO981871
EST:     TTAAACTCCGCTGAAACTCTTGTAGTTGGAACTGGAAATGGTTNNCTGAG                         GTTCTTTGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGAGGCGAATC
genomic: TTAAACTCCGCTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaa ... tactgtacagGTTCTTTGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGAGGCGAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataaaaaatatctcgatgcctgccaacatttgaatctttgttgtactgtacagGTTCTTTGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGAGGCGAATCTACTGAATCTAGTTTTCCTTCACTTATTTCTGCTATTTGTTCCACTGGC
     aaaaatatct  TA-rich tract