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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttctatgtgatgattacttccttatacttattggatgttatatttagggtctttaatggtacgctgcttttatttgtgccagATTGCTTTAAAATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCCAGCACCAATGTTAGGCATATTGTTCTTCCTT

Basic information

species Glycine max
transcript GLYMA10G38680.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38680.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0022g02110.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------------------------------------------------------gtatgcttctatgtgatgattacttccttatactta-ttggatgttatatttagggtctt---taatggtacgctgcttttatttgtgccagATTGCTTTAAAATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCCAGCACCAATGTTAGGCATATTGTTCTTCCTT
                                                                                   |||  |||  |    | ||   ||  | | | ||| ||  || || |  |  |  ||||   | ||| |   |||  |||  |  ||||||||| |||  |  ||| | || |||     |||||| || |||||||| || |||  ||||||||||||||| || ||||||||||||||||||||||| |
gtacattttctttccatgattgtcctattagaataatttctattttgagttaagagtacaaataaataacaatttcttaattttatatttcatttatttcatgtgtttgtaacaattacttctatattttcgtctgcttcttatgtgatgttgtcctgtgttttgtattgccagATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGTAATGAAAAAATGAAGGCCAGTACTAATGTTAGGCATATTGTTCTTCCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193562471|gb|FK518260.1|FK518260
EST:     CAGACTGGGTTAAGCAA                         ATTGCTTTAAAATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGA
genomic: CAGACTGGGTTAAGCAAgtatgcttct ... tttgtgccagATTGCTTTAAAATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGA
EST: gi|151412885|gb|EV282697.1|EV282697
EST:     AAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCAA                         ATTGCTTTAAAATTTTTGAAGCCAGATNNNNNNNCTGCTGACCTTGTTGGA
genomic: AAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCAAgtatgcttct ... tttgtgccagATTGCTTTAAAATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattggatgttatatttagggtctttaatggtacgctgcttttatttgtgccagATTGCTTTAAAATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCCAGCACCAATGTTAGGCATATTGTTCTTCCTT
                       ctttaat  putative branch site (score: 4)
                                       cttttattt  putative PPT
       atgttatattta  TA-rich tract