1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...agtgtatgagttattgttcaattcacaattacttctgtggaggtatgaacattgcagtcttcttaatagaaattgagcctattttttctttccaatgcagGGAAGGTATTTTGTCAACACCAGCCGTTTCTGCTGTTATAAGAAAGAGAAAG
species | Glycine max |
transcript | GLYMA10G38590.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTTGGAAA GGGAGGTATTTTGTCAACACCAEST: gi|120532649|gb|EH260782.1|EH260782
genomic: ATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTTGGAAAgtaattatct ... tccaatgcagGGAAGGTATTTTGTCAACACCA
EST: ATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTTGGAAA GGAAGGTATTTTGTCAACACCAGCCGTTTCTGCTGTTATAAGAAAGAGAAA
genomic: ATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTTGGAAAgtaattatct ... tccaatgcagGGAAGGTATTTTGTCAACACCAGCCGTTTCTGCTGTTATAAGAAAGAGAAA
tgaacattgcagtcttcttaatagaaattgagcctattttttctttccaatgcagGGAAGGTATTTTGTCAACACCAGCCGTTTCTGCTGTTATAAGAAAGAGAAAG
tcttaat putative branch site (score: 3)
cctattttttctttcc putative PPT
ttcttaatagaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtatgagttattgttcaattcacaattacttctgtggaggtatgaacattgcagtcttcttaatagaaattgagcctattttttctttccaatgcagGGAAGGTATTTTGTCAACACCAGCCGTTTCTGCTGTTATAAGAAAGAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- tgtatga
- - - - - - - - - - attcaca
- - - - - - - - - - - - - - - - - - gtggagg
- - - - - - - - - - - - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagaaa