Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatagtggccattatacttttttcttggttgggggaggttaaggttgataacattatgccatactgactgtcatcattttttgcaaaattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGATTGAACTGACAGGTGTGGGGAGAGGAG

Basic information

species Glycine max
transcript GLYMA10G38350.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G013600_T02 (Zea mays), 3'ss of exon 5
gtaaaatagtggccattatacttttttcttggttgggggaggttaaggttgataac--attatgccatactgactgtcatcattttttgcaaaattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGATTGAACTGACAGGTGTGGGGAGAGGAG
               | |   |||| |  ||    |       | |  || || |   ||| | | ||| |  |  |  | | ||  | |     |  ||||||||||||| |||||||| || || || |||||||| |||||||||||  | ||                                              
--------------gtgagtattttctaatgaaaagccctcacttatttttatgaacaattttactatattttc-attgttaattacttcgttgataaacagTTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAG---------------------------------------------

upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G013600_T01 (Zea mays), 3'ss of exon 5
gtaaaatagtggccattatacttttttcttggttgggggaggttaaggttgataa--cattatgccatactgactgtcatcattttttgcaaaattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGAT--TGAACTGACAGGTGTGGGGAGAGGAG
               | |   |||| |  ||    |       | |  || || |   ||| | | ||| |  |  |  | | ||  | |     |  ||||||||||||| |||||||| || || || |||||||| |||||||||||  | || || ||||| || ||| |||  ||| ||    ||  |||  ||     
--------------gtgagtattttctaatgaaaagccctcacttatttttatgaacaattttactatattttc-attgttaattacttcgttgataaacagTTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACGCCAGGTTGGTGGAGACTGAAGATGCTGATCTACTTGGCATGGAAAGGAT--

upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 5
lower sequence: AT5G51940.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaaaatagtggccattatacttttttcttggttgggggaggttaaggttgataacattatgccatactgactgtcatcattttttgcaaaattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGAT-TGAACTGACAGGTGTGGGGAGAGGAG
|| | | | ||  ||||   ||| | |  |  |          |     ||||  | |  |  | |  ||||| |  | ||  ||    |||     |||||  || || |||||||| ||||||||||| ||||||||||| |||||  | ||||| ||||||||||||| || ||| | || |    | |  | |    
gtgagagattg--cattgagcttatattattctcttcactcact-----tgatctcttcttttcttg-tgact-tacttatgattcctgaaa-----cagTTTCGAGGAATGGGGAGTTGATGAACTGATCGTGGAAGACTCATGGAAACGTCAAGTTGGTGGTGATTGATAATCTGACCAGAGACAAATCGACAAATAC-

upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 5
lower sequence: AT2G04630.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaaaatagtggccattatactttt-ttcttggttgggggaggttaaggttgataacattatgccatactgactgtcatcattttttgcaaaattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGATTGAACTGACAGGTGTGGGGAGAGGAG--
|| | || |      |||||    |  | || | |        | ||  |||||| | |  |  | | | ||||  | |     | ||   |||    |||||| || || |||||||| ||||||||||| || |||||||| |||||  | ||||| ||||||||||||| |   | ||| |   ||||    |   ||  
gtgagattgcattagttatatcaatacttttagctcttctt--tcaaatttgatatcttcttttcttgc-gacttacttatgactctg---aat----cagTTACGAGGAATGGGGAGTTGATGAACTGATCGTCGAAGACTCGTGGAAACGTCAAGTCGGTGGTGATTGATAA--AATCTGGCCTATGTGTTTTGCAAAGCT

upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0028g01210.t01 (Vitis vinifera), 3'ss of exon 5
--------gtaaaatagtggccattatacttttttcttggttgggggag----gttaaggttgataacattatgccatactga-ctgtcatcatt-------------------ttttgcaaaattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGATTGAACTGACAGGTGTGGGGAGAGGAG
         | |  | |  |  | |   ||| ||| | |||| |         ||| |  |   |    || | |  |  | | |||   |  ||                   || ||  | || || |||||||||||| ||||| || |||||| ||||||| |||||||| |||||||||||||||||||||||||||  | |   |     |  | |  ||   || 
gtaagggtcttagtttgaagttactggccttctttttaggttagccatacttagttgaactccctgctctttttctgttttcatctgcttttcttctatattgaaaacctttggttctgtgacatgctccagTTATGAAGACTGGGGGGTTGATGAATTGATTGTAGAAGACTCATGGAAGAGGCAAGTGGGTGGTGATTGACTAGTTCTCATTTGGCAGCGAAGAATTGAA

upper sequence: GLYMA10G38350.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0100g00530.t01 (Vitis vinifera), 3'ss of exon 7
------gtaaaatagtggccattatacttttttcttgg-ttgggggaggttaaggttgataacattatgccatactgactgtcatcattttttgcaaaa--ttctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGATTGAACTGACAGGTGTGGGGAGAGGAG
       ||| ||  |     | | |  ||  | |||  ||   |  | ||  | ||| |    |   |   |  | ||  | ||||||  |||       || | ||||||||||||||||||||| |||||| ||||||| || || || |||||||||||||| || |||||||||  |    ||     | |||||||| | |  
gtaacaataacattcttattttgaaaagttactattgtcttattgttgcttctgtttggt----tctcgttttctttacattaatcattggttgtgggggtttttccagTTATGAAGATTGGGGAGTGGATGAATTGATTGTAGAGGATTCATGGAAGAGGCAAGTTGGAGGTGATTGACTAACCCACGTTGGGCTGTGGGGAAATGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315321|gb|GR825130.1|GR825130
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|193483665|gb|FK452796.1|FK452796
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|17023174|gb|BM094208.1|BM094208
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|6913335|gb|AW394865.1|AW394865
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298169366|gb|HO020726.1|HO020726
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|31457537|gb|CD399565.1|CD399565
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|192303951|gb|FG993837.1|FG993837
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298187689|gb|HO031646.1|HO031646
EST:     CGAGAGCGGAAAATACCCTTTACGATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTC
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTC
EST: gi|26045616|gb|CA783150.1|CA783150
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298165196|gb|HO011245.1|HO011245
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|24135619|gb|BU926129.1|BU926129
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|192316457|gb|FK008190.1|FK008190
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|151407894|gb|EV277709.1|EV277709
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTAGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|14258684|gb|BG881592.1|BG881592
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|19934747|gb|BQ079777.1|BQ079777
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|193544642|gb|FK500769.1|FK500769
EST:     CAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|18039503|gb|BM307797.1|BM307797
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|192295900|gb|FG990910.1|FG990910
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|208048434|gb|GD847001.1|GD847001
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298192149|gb|HO036231.1|HO036231
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|16347285|gb|BI972880.1|BI972880
EST:     CAAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAAATTGGGGAGTCCATGAACTGATTGTGTAAAACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|15814904|gb|BI787179.1|BI787179
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|254315322|gb|GR825131.1|GR825131
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|163926269|gb|EH039164.1|EH039164
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|6482337|gb|AW201604.1|AW201604
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|151403366|gb|EV273176.1|EV273176
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298199496|gb|HO042859.1|HO042859
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|10255441|gb|BE823207.1|BE823207
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298181130|gb|HO022569.1|HO022569
EST:     CGAAAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCT
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCT
EST: gi|22927456|gb|BU544595.1|BU544595
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298197722|gb|HO045201.1|HO045201
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298179996|gb|HO025211.1|HO025211
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|193527028|gb|FK485450.1|FK485450
EST:     ACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: ACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298198238|gb|HO039777.1|HO039777
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|19935890|gb|BQ080630.1|BQ080630
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298168737|gb|HO009667.1|HO009667
EST:     CGAGTGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|298183107|gb|HO028370.1|HO028370
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
EST: gi|193585103|gb|FK540686.1|FK540686
EST:     CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAG                         TTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG
genomic: CGAGAGCGGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGgtaaaatagt ... aattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggttgataacattatgccatactgactgtcatcattttttgcaaaattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGATTGAACTGACAGGTGTGGGGAGAGGAG
                    tactgac  putative branch site (score: 1)
                                  attttttgcaaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaatagtggccattatacttttttcttggttgggggaggttaaggttgataacattatgccatactgactgtcatcattttttgcaaaattctacagTTATGAAGATTGGGGAGTCGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGATTGAACTGACAGGTGTGGGGAGAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
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