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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaacattgcgcggtcttgcttatcaattattcattctggttatttttttgctggtatattccactggtatattaacaaaatccatctaaatcttttgcagAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAG

Basic information

species Glycine max
transcript GLYMA10G37780.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37780.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0050g00700.t01 (Vitis vinifera), 3'ss of exon 6
gtaagga-acattgcgcggtcttgct--------tatcaattattca--ttctggttatttttttgctggtatattccactggtatattaaca--------aaatccatctaaatcttttgcagAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAG--
||||||  |||||      |||   |        ||||||   ||||  || ||||| || |||  ||  | | ||   ||  | | || | |         ||    | | |||   |||||| ||||||| ||||| || ||||| || || || ||||| ||||| || || ||||||||||| |||||| | |||||||||||||||||   ||     |  
gtaaggggacatttatttatctatttcttcccattatcaaactttcagcttttggtttttatttatcttctttttttttcttttttttttaaatggatgttgaagatgtatcaattcattgcagGATATTGTCCAATCTAGACCTTCCAGGTTCCCAATATCCTCCCAGGATTTATTCAGTATCCTTGATGATGCAAGTGAAAAAACATTTTTA--TGTGCTGGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgctggtatattccactggtatattaacaaaatccatctaaatcttttgcagAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAG
                                             tcttttgc  CT-rich tract
                      tatattaacaaaat  TA-rich tract