1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tggctttctttttctttgtttggtgagtaagtcagtgctttgtttttgccacatttgctgttttttatgtgtataatattatgtattgcatcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACCACCAATCTTTTCCGACATAACAGTGCAGTGAATG
species | Glycine max |
transcript | GLYMA10G37760.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG GAAGATGGGGTGGATATTTCTGCAA-TTCTCTTCATCCAGGAACAATTACCEST: gi|209724402|gb|BW658171.1|BW658171
genomic: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACC
EST: AAAGCTCGCCAACATTTTACATGCAAATGAACTTANCA-GACGTCTCNAG GAAGATGGGGTGGATATTTCTGNCAA-TTCTCTTCATCCAGGAAACA-TTAEST: gi|57575920|gb|CX548891.1|CX548891
genomic: AAAGCTCGCCAACATTTTACATGCAAATGAACTTA-CAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTG-CAAATTCTCTTCATCCAGGAA-CAATTA
EST: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACCEST: gi|58024590|gb|CX711331.1|CX711331
genomic: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACC
EST: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACCEST: gi|58024332|gb|CX711073.1|CX711073
genomic: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACC
EST: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACCEST: gi|192304811|gb|FG996027.1|FG996027
genomic: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACC
EST: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACCEST: gi|58021522|gb|CX708263.1|CX708263
genomic: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACC
EST: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAG GAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACC
genomic: CAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGgtgtgctggc ... tcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACC
ttgccacatttgctgttttttatgtgtataatattatgtattgcatcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACCACCAATCTTTTCCGACATAACAGTGCAGTGAATG
tgttttttatgtgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggctttctttttctttgtttggtgagtaagtcagtgctttgtttttgccacatttgctgttttttatgtgtataatattatgtattgcatcttgatcagGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACCACCAATCTTTTCCGACATAACAGTGCAGTGAATG
- - - - - - - - - tttggtg
- - - - - - - - - - - - - - - -tcagtgc
- - - - - - - - - - - - - - - - - - - - - - - tgccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattgca