1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cttgtgatgcttttaatataattcatgcatttggcaaattccaattgaagggaaagactactcgcatacatggttaaattttgaaataatgttgatgcagGCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATA
species | Glycine max |
transcript | GLYMA10G37440.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGATCTTCCAGAGCCACCTACAGTAACCGTGGTTAAACCTAAATACAG GCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAAEST: gi|151404312|gb|EV274122.1|EV274122
genomic: AATGATCTTCCAGAGCCACCTACAGTAACCGTGGTTAAACCTAAATACAGgttagtgcag ... gttgatgcagGCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAA
EST: AATGATCTTCCAGAGCCACCTACAGTAACCGTGGTTAAACCTAAATACAG GCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAAEST: gi|13481891|gb|BG511234.1|BG511234
genomic: AATGATCTTCCAGAGCCACCTACAGTAACCGTGGTTAAACCTAAATACAGgttagtgcag ... gttgatgcagGCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAA
EST: AATGATCTTCCAGAGCCACCTACAGTAACCGTGGTTAAACCTAAATACAG GCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAA
genomic: AATGATCTTCCAGAGCCACCTACAGTAACCGTGGTTAAACCTAAATACAGgttagtgcag ... gttgatgcagGCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAA
tgaagggaaagactactcgcatacatggttaaattttgaaataatgttgatgcagGCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATA
tgttgat putative branch site (score: 4)
ttaaattttgaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtgatgcttttaatataattcatgcatttggcaaattccaattgaagggaaagactactcgcatacatggttaaattttgaaataatgttgatgcagGCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATA
- - tgatgct
- - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - -gaaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataca