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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttcaagatacttgtaatttttttaattagttcgtctgattaatttctctaattattttaaagtatgataaattgtccactcaacactgcagGCTGTGATGCTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTATACCAAACTTGCATTCAATTATTACAGCGTCTGATGGG

Basic information

species Glycine max
transcript GLYMA10G37210.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37210.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g47080.1 (Oryza sativa), 3'ss of exon 5
gtaaattttcaagatacttgtaattttt-ttaattagttcgtctgattaatttctctaattattttaa-agtatgataaattgtccactcaacactgcagGCTGTGATGCTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTATACCAAACTTGCATTCAATTATTACAGCGTCTGATGGG
             ||| || |    |   |||   |  |  ||      | || |  || | | |||| ||| || |   ||||    |  |  || ||||||   |||| ||||||||||| |||||||| |||||||||||||| || || |||||| | || ||||| || ||||| || ||||||
----------gtaataattatcccctacattatgaaaattatccagc--acttattcaactgtcttaatagtgtgtt---ttgtt---ttgattct-cagGCTCCAATGCCGATATACATGTAATTGTAAAGATTGAAAGTGCAGATTCCATTCCAAACCTACACTCAATCATCACAGCATCGGATGGG

upper sequence: GLYMA10G37210.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G152686_T01 (Zea mays), 3'ss of exon 5
gtaaattttcaagatacttgtaatttttttaattagttcgtctgattaatttctctaattattttaaagtatgataaatt--gtccactcaacactgcagGCTGTGATGCTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTATACCAAACTTGCATTCAATTATTACAGCGTCTGATGGG
|||| | |||||         || ||| | ||  |  || | | ||  |  | |       ||||| | | |  | |  |   || | || |  || |||| ||  ||||||| |||||||| || |||||||| |||||||||||||| || || ||||| |||||||| || ||||| |||||||||
gtaa-tcttcaa------cccaactttgtaaa--aaatcatatcatgcaccttt-------ttttacaatttactgagctcattctattctattct-cagGTTGCAATGCTGACATACATGTTATCGTAAAAATAGAAAGTGCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGG

upper sequence: GLYMA10G37210.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaaattttcaagatacttgtaatttttt-taattagttcgtctgattaatttctctaattattttaaagtatgataaattgtccactcaacactgcagGCTGTGATGCTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTATACCAAACTTGCATTCAATTATTACAGCGTCTGATGGG
||||||  |    |    |   ||  |   | | |  || | ||     |||||  |  |  | | |   |  |||   ||||  ||  |    |||||   ||| |||||||||||| || || || |||||||| ||||||||||| ||||| |||||||| || ||||| ||||| || ||||||
gtaaatacttggaacctattccatcctaagtgaatgatttgcctatgatatttcctttttggtctaaccttgagattgtttgtt-acaaatatttgcagATAGTGGTGCTGATATACACGTGATAGTGAAAATTGAGAGTGCAGACTCCATACCTAACTTGCACTCCATTATCACAGCATCAGATGGG

upper sequence: GLYMA10G37210.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 3'ss of exon 5
gtaaattttcaagatacttgt---aatttttttaattagttcgtctgattaatttctctaattattttaaagtatgataaattgtccactcaacactgcagGCTGTGATGCTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTATACCAAACTTGCATTCAATTATTACAGCGTCTGATGGG
||||||  | | |||| |  |    |  |   ||| ||  | |  ||||   |   |    | |  ||  |  |     |||  |   ||     | ||||||||| |||| ||||| ||||||||||| |||||||||||||| ||||| || || ||  | |||||||||||||| || |||||||||
gtaaatacttaggatattcatttggaaataactaaataacttgcttgatctgtaatttgcttcaaattttaccacttataatctttaccttgtttcggcagGCTGTAATGCAGATATCCATGTCATTGTTAAAATTGAAAGTGCCGACTCCATTCCCAATCTACATTCAATTATTACCGCATCTGATGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207776151|gb|GD749948.1|GD749948
EST:     TTTTGTTAAAGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAA                         GCTGTAGAATAGCTGATATAC
genomic: TTTTGTTAAAGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAAgtaaattttc ... aacactgcagGCTGT-GA-T-GCTGATATAC
EST: gi|151410647|gb|EV280462.1|EV280462
EST:     TTTTGTTAAAGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAA                         GCTGCGATGCTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTA
genomic: TTTTGTTAAAGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAAgtaaattttc ... aacactgcagGCTGTGATGCTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTA
EST: gi|151411074|gb|EV280885.1|EV280885
EST:     TTTTGTTAAAGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAA                         GCTGCGATGCTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTA
genomic: TTTTGTTAAAGATGCACAAGTAGTTCATGAACTGAAGAATTATTTGAAAAgtaaattttc ... aacactgcagGCTGTGATGCTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattaatttctctaattattttaaagtatgataaattgtccactcaacactgcagGCTGTGATGCTGATATACATGTCATTGTAAAAATTGAAAGTGCAGACTCTATACCAAACTTGCATTCAATTATTACAGCGTCTGATGGG
         ctctaat  putative branch site (score: 3)
     atttctctaattattt  TA-rich tract