1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cactcagtatgtaggatttgaactccgtggttaatgatttttcacaaaattatgtactcaaatttcagtgtttgctgacattgtggttgggatggcacagGTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGTTCTCTCGGTTTCCTGGTCCCAGATCTGGACCTGGACCTCGTGGCAAGAG
species | Glycine max |
transcript | GLYMA10G37090.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAG GTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGTEST: gi|58020616|gb|CX707358.1|CX707358
genomic: GGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAGgtatcacttc ... gatggcacagGTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGT
EST: GGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAG GTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGTEST: gi|58025090|gb|CX711831.1|CX711831
genomic: GGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAGgtatcacttc ... gatggcacagGTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGT
EST: GGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAG GTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGTEST: gi|58018483|gb|CX705225.1|CX705225
genomic: GGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAGgtatcacttc ... gatggcacagGTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGT
EST: GGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAG GTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGTEST: gi|31465044|gb|CD407072.1|CD407072
genomic: GGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAGgtatcacttc ... gatggcacagGTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGT
EST: GGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTCCAAG GTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACATGCGGCTTCAGT
genomic: GGATTTTGCTAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAGgtatcacttc ... gatggcacagGTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGT
aaaattatgtactcaaatttcagtgtttgctgacattgtggttgggatggcacagGTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGTTCTCTCGGTTTCCTGGTCCCAGATCTGGACCTGGACCTCGTGGCAAGAG
tgctgac putative branch site (score: 2)
tcaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactcagtatgtaggatttgaactccgtggttaatgatttttcacaaaattatgtactcaaatttcagtgtttgctgacattgtggttgggatggcacagGTTATAAAGTTGATGAACTCAATCCAGAGTCTAGCCACTTGCGGCTTCAGTTCTCTCGGTTTCCTGGTCCCAGATCTGGACCTGGACCTCGTGGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - -tatgtag
- - - - - - - - - - - ctccgtg
- - - - - - - - - - - - - - - - - - - - - - - - - tatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgg