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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtccctcctcctccatatatccttcttgaaatgcatattccatgtgtttttctctttccattgaattctcccgcaatattagtataccagacacagagaagggattaattgataatattgcagattgaatataatatattgcggttgtcaatttgagtgtgttgtcttccatttagATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGATGTTTTGCAACCCGGGAAGAACATGTTGGCAGCTGGTTATTGTATGTATG

Basic information

species Glycine max
transcript GLYMA10G36990.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399155|gb|EV269026.1|EV269026
EST:     ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACA                         ATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
genomic: ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACAgtatggtccc ... ttccatttagATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
EST: gi|151406217|gb|EV276032.1|EV276032
EST:     ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACA                         ATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
genomic: ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACAgtatggtccc ... ttccatttagATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
EST: gi|17964404|gb|BM271140.1|BM271140
EST:     ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACA                         ATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
genomic: ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACAgtatggtccc ... ttccatttagATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
EST: gi|120532042|gb|EH260175.1|EH260175
EST:     ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACA                         ATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
genomic: ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACAgtatggtccc ... ttccatttagATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
EST: gi|213608834|gb|DB957198.1|DB957198
EST:     ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACA                         ATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
genomic: ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACAgtatggtccc ... ttccatttagATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
EST: gi|17518569|gb|BM187611.1|BM187611
EST:     ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACA                         ATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT
genomic: ACCCGCTGGATGGTTCTTCTAACATTGATTGTGGTGTTTCAATTGGCACAgtatggtccc ... ttccatttagATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattgaatataatatattgcggttgtcaatttgagtgtgttgtcttccatttagATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGATGTTTTGCAACCCGGGAAGAACATGTTGGCAGCTGGTTATTGTATGTATG
                                           tcttccattt  CT-rich tract
      aatataatatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggtccctcctcctccatatatccttcttgaaatgcatattccatgtgtttttctctttccattgaattctcccgcaatattagtataccagacacagagaagggattaattgataatattgcagattgaatataatatattgcggttgtcaatttgagtgtgttgtcttccatttagATCTTTGGGATTTATTTGATAAAAGAAGACCATGAACCAACCATTGAAGATGTTTTGCAACCCGGGAAGAACATGTTGGCAGCTGGTTATTGTATGTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG