Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgttgtcttcttgattatggttttgtgcagtaaattattgaacagcaggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTTTATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAG

Basic information

species Glycine max
transcript GLYMA10G36780.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 3'ss of exon 5
---------------------gttagtgttgt-cttcttgattatggttttgtgcagtaaattattgaacagcaggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTTTATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAG
                      |||     |  || | |||||     | |||    |   ||  |   |    | |  |  ||  |    ||    ||   |   | | |||| | |      |||||| ||||| ||||| || || |||||||| ||||||||||| |||||||| ||||  || |   ||||| ||||||| ||||||||||| |||||||||
gtaccaattcgtctaccagatattacaccagcactccatgattgcaaatctgtcttctgt-ttgatatgctattgcatctgtttgcgagcgaaacttaaacgatattgtgcttgctcttgcgctcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCTCACTACGGTGTTGTGAAGGGCGACTACCTCATGATCAAGGGTTGCTGTGTTGGCCCCAAGAAG

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G132968_T02 (Zea mays), 3'ss of exon 5
gttagtgttgtcttcttgattatggttttgtgcagtaaattattgaacagcaggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTTTATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAG
      ||  | ||  |||     | ||  || | ||| ||     |||    |   ||| || ||||    ||   ||        | ||| |  |   | |||||||||||| ||||| || || |||||||| ||||| ||||||||| | || |||| ||| |   | ||| |||||||||||||||| ||||| ||||||
------gtactatttctga-----gcttcttgtactaacttgc---acaatctgtt-tacctttgttgc---tcttgttggttacgga-ttgctgccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G135727_T01 (Zea mays), 3'ss of exon 5
gttagtgttgtcttcttgattatggttttgtgcagtaaattattgaacagcaggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTTTATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAG
      ||  | ||  |||     | ||  || | ||| ||     |||    |   ||| || ||||    ||   ||      | | ||| |  |   | |||||||||||| ||||| || || |||||||| ||||| ||||||||| | || |||| ||| |   | ||| |||||||||||||||| ||||| ||||||
------gtactatttctga-----gcttcttgtactaacttgc---acaatctgtt-tacctttgttgc---tcttgttggtta-cgaattgctgccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G361049_T01 (Zea mays), 3'ss of exon 11
gttagtgttgtcttcttgattatggttttgtgcagtaa-attattgaacagcaggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTTTATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAG
         || | |||||||      |   ||||||| ||| || |  | |  ||     |||| |  |   |||  ||  |    | || ||| | |    |||||||||||| ||||| || || |||||||||||||| ||||| ||| |  | ||||  || |   | ||| ||||||| ||||| || || |||||||| 
---------gtatccttgattca---ctgcagcagtaacattgttcacaatcttgag----tttgctcct---tcagttt--ctgaatgctggttgttta---cagGACCGAGAAGGACATCACTCCCATGGGTGGTTTCCCCCACTACGGTATCATCAAGGGCGACTACCTGATGATCAAGGGTTGCTGCGTCGGCCCCAAGAAA

upper sequence: GLYMA10G36780.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0072g00340.t01 (Vitis vinifera), 3'ss of exon 5
gttagtgttgtcttcttgattatggttttgtgcagtaaattattgaacagcaggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTTTATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAG
 | |||  |     |     |||| || | | |   |  | |  | |  ||    | | ||   ||    | |   |||    || ||||||  |  | |  |||||||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||| | | ||| ||||||| ||||||||||| || ||||||
-taagtaataatagccc---tatgtttgtatactcaatctcacaggat-gccaacattgctaccgtaactaatatcattgtttctttacttggataataaaacagGACCGAGAAAGACATAACTCCAATGGGTGGTTTCCCTCACTACGGTGTGGTGAAGGATGATTATGTGATGATCAAGGGTTGCTGTGTTGGGCCTAAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706623|gb|BW676144.1|BW676144
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|20449279|gb|BQ253403.1|BQ253403
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|7685613|gb|AW756261.1|AW756261
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|31310382|gb|CD395585.1|CD395585
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|214008494|gb|DB988197.1|DB988197
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209718049|gb|BW671882.1|BW671882
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|9203804|gb|BE330028.1|BE330028
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|58022968|gb|CX709709.1|CX709709
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|254327412|gb|GR837021.1|GR837021
EST:     CTTGGCAAAGCTGGAGATGAATCTCGCTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209700390|gb|BW660834.1|BW660834
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|298164661|gb|HO014306.1|HO014306
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|193346201|gb|FK309693.1|FK309693
EST:     CTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|151398239|gb|EV268117.1|EV268117
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209718972|gb|BW674812.1|BW674812
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|31308731|gb|CD393934.1|CD393934
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209716134|gb|BW668660.1|BW668660
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209705364|gb|BW668008.1|BW668008
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|208125395|gb|GD922861.1|GD922861
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|18038729|gb|BM307023.1|BM307023
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|208148234|gb|GD947246.1|GD947246
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209717596|gb|BW671492.1|BW671492
EST:     TCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: TCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|7145754|gb|AW507676.1|AW507676
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|4396023|gb|AI495020.1|AI495020
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|15814258|gb|BI786533.1|BI786533
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209699781|gb|BW655794.1|BW655794
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|209711915|gb|BW678994.1|BW678994
EST:     AGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: AGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|298190646|gb|HO032767.1|HO032767
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|7588910|gb|AW704695.1|AW704695
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|58016492|gb|CX703234.1|CX703234
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|193322165|gb|FK284943.1|FK284943
EST:     CTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|31309630|gb|CD394833.1|CD394833
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|208177574|gb|GD973999.1|GD973999
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|22522850|gb|BU081661.1|BU081661
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCCATAGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|7285737|gb|AW598224.1|AW598224
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|193378951|gb|FK343501.1|FK343501
EST:     ACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: ACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|58022760|gb|CX709501.1|CX709501
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|6915277|gb|AW396807.1|AW396807
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|12687903|gb|BG154299.1|BG154299
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|15815349|gb|BI787624.1|BI787624
EST:     CTTGGCAAAACTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|193376331|gb|FK342640.1|FK342640
EST:     CTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|58025437|gb|CX712178.1|CX712178
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|58015151|gb|CX701893.1|CX701893
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|208193298|gb|GD990279.1|GD990279
EST:     AATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: AATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
EST: gi|193636900|gb|FK578967.1|FK578967
EST:     CTTGGCAAAGCTGGAGATGAATCCCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCC
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCC
EST: gi|298199138|gb|HO042501.1|HO042501
EST:     CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAG                         GACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT
genomic: CTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgttagtgttg ... tctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTTTATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAG
                               ccctctacttgttttc  CT-rich tract
                      tcaaattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtgttgtcttcttgattatggttttgtgcagtaaattattgaacagcaggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccagGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTTTATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG