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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataattataattccctgcccgatattttgattttattcatatataattcaatttcatagctaaaatgtctcttgctttcttctttcagtttctatactgatttaatatagcaattattcagtttcagtatctacaaaggggttctctattattttcatttcttatgtgtataattttgcagAATGAATACTCGGAGGAATGGGCTCTAGCATGTGGTGAAATTTTGCGCATTTTAACTCATTACAATCGCCCTATTTACAAAACAGAAAGACAATCTGGTG

Basic information

species Glycine max
transcript GLYMA10G36600.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G22770.1 (Arabidopsis thaliana), 3'ss of exon 4
gtataattataattccctgcccgatattttgattttattcatatataattcaatttcatagctaaaatgtctcttgctttcttctttcagtttctatactgatttaatatagcaattattcagtttcagtatctacaaa---ggggt--tctctattattttcatttcttatgtgtataattttg-cagAATGAATACTCGGAGGAATGGGCTCTAGCATGTGGTGAAATTTTGCGCATTTTAACTCATTACAATCGCCCTATTTACAAAACAGAAAGACAATCTGGTG
                                                                                                          |||||  |  | |  ||| ||| |   |||  |   || ||   || ||  |||||    |   ||||  |  ||  |  |||||||| || |||||| |||||||| | |||||||| |||||  | |||||||| ||||||||||| || || ||||| ||||| ||    |||  ||| |
--------------------------------------------------------------------------------------------------------gtatataatagctgtctagtatca-tgcttactgatttggtgtaacctataccattttgtgctaacatgttcactatcctaacagAATGACTATTCGGAGCAATGGGCTTTGGCATGTGGAGAAATCCTTCGCATTTTGACTCATTACAACCGTCCCATTTATAAAACTGAGCAGCAAAATGGAG

upper sequence: GLYMA10G36600.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0157g00020.t01 (Vitis vinifera), 3'ss of exon 6
gtataattataattccctgcccgatattttgattttattcatatataattcaatttcatagctaaaatgtctcttgctttcttctttcagtttctatactgatttaatatagcaattattcagtttcagtatctacaaaggggttctctattattttcatttcttatgtgtataattttgcagAATGAATACTCGGAGGAATGGGCTCTAGCATGTGGTGAAATTTTGCGCATTTTAACTCATTACAATCGCCCTATTTACAAAACAGAAAGACAATCTGGTG
||||  |  |  |  | || | ||       |||| | |         ||||| |   | ||| |      | || ||||||| ||  | | |   |   | ||| | | |   |||   || ||    | |  |   | | ||   | |    |     | | | | | || |   ||||||||||| || || ||  |||||||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||||||    |||   ||     |||
gtatg-tcgtgctggcatgactgaa---caaatttgagttgctctgctttcaaatatcttgctcatgctattttttctttcttgttaaactgtagttttgggttttagaaacttatt-cccaattcttatgtg-attgatgagtggacaagagatcgtgatacatttttctaaa---ttgcagAATGAGTATTCTGAACAATGGGCTCTGGCATGTGGGGAGATTTTGCGAATTTTAACTCATTACAATCGCCCAATTTACAAGGTGGAACATCAGAGCAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatctacaaaggggttctctattattttcatttcttatgtgtataattttgcagAATGAATACTCGGAGGAATGGGCTCTAGCATGTGGTGAAATTTTGCGCATTTTAACTCATTACAATCGCCCTATTTACAAAACAGAAAGACAATCTGGTG
                    tattattttcatttct  TA-rich tract