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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggatacattgactttaacattctttcattttggtaaaaatagtttcttaattgattagtgctgtacgtatgcctgatagaccattcttcttctcttgcagAGCTTCAGCAATTTTTATTGGTGTGTATGAACCCACAAAGCAGCAATTGCTAAAGTCATTGCCTGAAAATCTCAGTGCCGTGGCTCATTTT

Basic information

species Glycine max
transcript GLYMA10G36580.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330015|gb|FK020831.1|FK020831
EST:     TTGAAGGGTCTGTACTCTGGGTTGGCTGGAAATATTGTTGGTGTCTTACC                         AGCTTCAGCAATTTTTATTGGTGTGTATGAACCCACAAAGCAGCAATTGCT
genomic: TTGAAGGGTCTGTACTCTGGGTTGGCTGGAAATATTGTTGGTGTCTTACCgtgagtaaac ... tctcttgcagAGCTTCAGCAATTTTTATTGGTGTGTATGAACCCACAAAGCAGCAATTGCT
EST: gi|192328563|gb|FK020781.1|FK020781
EST:     TTGAAGGGTCTGTACTCTGGGTTGGCTGGAAATATTGTTGGTGTCTTACC                         AGCTTCAGCAATTTTTATTGGTGTGTATGAACCCACAAAGCAGCAATTGCT
genomic: TTGAAGGGTCTGTACTCTGGGTTGGCTGGAAATATTGTTGGTGTCTTACCgtgagtaaac ... tctcttgcagAGCTTCAGCAATTTTTATTGGTGTGTATGAACCCACAAAGCAGCAATTGCT
EST: gi|192328905|gb|FK021374.1|FK021374
EST:     TTGAAGGGTCTGTACTCTGGGTTGGCTGGAAATATTGTTGGTGTCTTACC                         AGCTTCAGCAATTTTTATTGGTGTGTATGAACCCACAAAGCAGCAATTGCT
genomic: TTGAAGGGTCTGTACTCTGGGTTGGCTGGAAATATTGTTGGTGTCTTACCgtgagtaaac ... tctcttgcagAGCTTCAGCAATTTTTATTGGTGTGTATGAACCCACAAAGCAGCAATTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaattgattagtgctgtacgtatgcctgatagaccattcttcttctcttgcagAGCTTCAGCAATTTTTATTGGTGTGTATGAACCCACAAAGCAGCAATTGCTAAAGTCATTGCCTGAAAATCTCAGTGCCGTGGCTCATTTT
                                   ccattcttcttctctt  CT-rich tract
     ttgatta  TA-rich tract