Sequence
atgc intronic sequence ATGC exonic sequencegtaattagctttacttcttttgttgccaaatattttctgctttcttgaacttggaatatattcatgtctttctagGTTGTTAAGCAAAGGATGCAGATTGGGCAATTTAAATCAGCCCCAGATGCTGTCCGTCTTATTGTTGCTAATGAGGGTTTTAAAGGTCTTTTTGCG
Basic information
species | Glycine max |
transcript | GLYMA10G36580.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G36580.3 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G042027_T05 (Zea mays), 3'ss of exon 6
gtaattagctttacttctt-ttgttgccaaatattttctgctttcttgaacttggaatatattcatgtctttctagGTTGTTAAGCAAAGGATGCAGATTGGGCAATTTAAATCAGCCCCAGATGCTGTCCGTCTTATTGTTGCTAATGAGGGTTTTAAAGGTCTTTTTGCG
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gtctgtaattttatatcttattactactccatgtagt--gttgtactccatccaaattagatgtcactgcatccagGTGGTCAAACAAAGGATGCAAACTGGTCAATTCAAGTCTGCACCTGATGCTGTTCGTCTCATTGTTGCTAAAGAAGGATTTAAAGGACTGTACGCT
upper sequence: GLYMA10G36580.3 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0157g00180.t01 (Vitis vinifera), 3'ss of exon 6
gtaattagctttacttcttttgttgccaaatattttctgctttcttgaacttggaatatattcatgtctttctagGTTGTTAAGCAAAGGATGCAGATTGGGCAATTTAAATCAGCCCCAGATGCTGTCCGTCTTATTGTTGCTAATGAGGGTTTTAAAGGTCTTTTTGCG
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gttttgaacttttcttcaatcctattct--ttcttcttataatcttgagcctcttatcatttcaacacctcccagGTTGTTAAGCAAAGAATGCAGACTGGGCAATTTGCTTCTGCAACTGATGCTGTTCAACTTATTGTTGCCAAGGAGGGGTTTAAAGGTCTCTATGCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12689523|gb|BG155859.1|BG155859EST: CAGGTGCTATTGGAGGCATTGCTTCTTCTGTTGTTCGTGTTCCAACTGAG GTTGTTAAGCAAAGGATGCAGATTGGGCAATTTAAATCAGCCCCAGATGCT
genomic: CAGGTGCTATTGGAGGCATTGCTTCTTCTGTTGTTCGTGTTCCAACTGAGgtaattagct ... gtctttctagGTTGTTAAGCAAAGGATGCAGATTGGGCAATTTAAATCAGCCCCAGATGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgccaaatattttctgctttcttgaacttggaatatattcatgtctttctagGTTGTTAAGCAAAGGATGCAGATTGGGCAATTTAAATCAGCCCCAGATGCTGTCCGTCTTATTGTTGCTAATGAGGGTTTTAAAGGTCTTTTTGCG
tgtctttct CT-rich tract
aaatattttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtaattagctttacttcttttgttgccaaatattttctgctttcttgaacttggaatatattcatgtctttctagGTTGTTAAGCAAAGGATGCAGATTGGGCAATTTAAATCAGCCCCAGATGCTGTCCGTCTTATTGTTGCTAATGAGGGTTTTAAAGGTCTTTTTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG