1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccacttggtaggggccttgtgcactaggtcacccctttttattattatgataatttgttcctctaaataacatttctatctttgctgctattgtattcagGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATCATGCTAGCTGAGTACATATTTTCTGAAAGTCCTGAGGTG
species | Glycine max |
transcript | GLYMA10G35830.5 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAA GTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATEST: gi|298175730|gb|HO018327.1|HO018327
genomic: GCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAgtgagactta ... ttgtattcagGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACAT
EST: GCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAA GTGGTCTGCCGGAAATGGEST: gi|7232476|gb|AW567831.1|AW567831
genomic: GCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAgtgagactta ... ttgtattcagGTGGTCTGCCGGAAATGG
EST: GCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAA GTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATEST: gi|151412195|gb|EV282007.1|EV282007
genomic: GCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAgtgagactta ... ttgtattcagGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACAT
EST: GCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAA GTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACAT
genomic: GCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAgtgagactta ... ttgtattcagGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACAT
tatgataatttgttcctctaaataacatttctatctttgctgctattgtattcagGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATCATGCTAGCTGAGTACATATTTTCTGAAAGTCCTGAGGTG
aaataac putative branch site (score: 2)
taaataacatttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacttggtaggggccttgtgcactaggtcacccctttttattattatgataatttgttcctctaaataacatttctatctttgctgctattgtattcagGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATCATGCTAGCTGAGTACATATTTTCTGAAAGTCCTGAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA