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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttcatttgatccctttttttttcatttcttccctctcatattcatttatcttgaaacaaataagcagaaaagtatttgatgttttaagcttcattaataccttcccttagcaatcatataatagttattttcctttcaagctcatgctatctttgataatgcagCCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAATGTTGCTCCTACACTGCCAGAACTCCAG

Basic information

species Glycine max
transcript GLYMA10G35730.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35730.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0019g03870.t01 (Vitis vinifera), 3'ss of exon 4
gttgttcatttgatccctttttttttcatttcttccctctcatattcatttatcttgaaacaaataagcagaaaagtat-ttgatgttttaagcttcattaataccttcccttagcaatcatataatagttattttcctttcaagctcatgctatctttgat--aatgcagCCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAATGTTGCTCCTACACTGCCAGAACTCCAG
                                                ||||| |    |  | ||   |  | | ||| |||| | |||||        |  ||  | |   |     || |                 || |||| |||   ||||| ||    | ||||||||||||||||||||| || ||||||||||| ||  | ||||||||||||||||||||||| || |||||  |||||
------------------------------------------------tttatttattgatcagtagcaaagagaatatattgaagatttaa--------agaactgtacaccaaggtacacagg---------------tcgagctaatgtgttcttttatttgttacagCCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatcatataatagttattttcctttcaagctcatgctatctttgataatgcagCCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAATGTTGCTCCTACACTGCCAGAACTCCAG
                                         ctttgat  putative branch site (score: 5)
      atataatagttatttt  TA-rich tract