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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgcattttatgtactgtgattaattatttcattgctaatttttcaagtaataatccctttttgctctcctaacaattaaaagcctcttgtcagGTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG

Basic information

species Glycine max
transcript GLYMA10G35320.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35320.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0019g04590.t01 (Vitis vinifera), 3'ss of exon 5
----gcatgcattttatgtactgtgattaattatttcattgctaatttttcaagtaataatccctttttgctctcctaacaatta-aaagcctcttgtcagGTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG
    || ||  |||| ||   | |     | |||| |||  || ||| |     |  |      |  |||||  |  |   || | ||| | | ||  |||||||| |||||||| || ||||| |||||||| || ||||||||||| || |||||||| ||||| |||
gttcgcctggcttttgtgatttctctggtagtattgcat--ctgattgt----attttggattttccttgcttcctcactgatgacaaaacatgtttccagGTTATGCAATTTCTTGAGTCACAAGAATATAGTATATTTACTCGAATTGTTTTTGATACTGCACCCACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258515|gb|BE346662.1|BE346662
EST:     TACTGGATTCACCTCCTCCTGGACTGGATGAAGCTATTGCGATCTCCAAG                         GTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTA
genomic: TACTGGATTCACCTCCTCCTGGACTGGATGAAGCTATTGCGATCTCCAAGgcatgcattt ... ctcttgtcagGTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTA
EST: gi|7796764|gb|AW782158.1|AW782158
EST:     TTGCGATCTCCAAG                         GTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTA
genomic: TTGCGATCTCCAAGgcatgcattt ... ctcttgtcagGTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTA
EST: gi|7692581|gb|AW760684.1|AW760684
EST:     TACTGGATTCACCTCCTCCTGGACTGGATGAAGCTATTGCGATCTCCAAT                         GTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTA
genomic: TACTGGATTCACCTCCTCCTGGACTGGATGAAGCTATTGCGATCTCCAAGgcatgcattt ... ctcttgtcagGTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTA
EST: gi|9564725|gb|BE474234.1|BE474234
EST:     TACTGGATTCACCTCCTCCTGGACTGGATGAAGCTATTGCGATCTCCAAG                         GTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTA
genomic: TACTGGATTCACCTCCTCCTGGACTGGATGAAGCTATTGCGATCTCCAAGgcatgcattt ... ctcttgtcagGTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcaagtaataatccctttttgctctcctaacaattaaaagcctcttgtcagGTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACG
                            tcctaac  putative branch site (score: 1)
                                            cctcttgtc  putative PPT
                               taacaattaaaa  TA-rich tract