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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttctagttgaatatacaccactgaaatactttgtctttatttatgtcttggaagatttcattttgtcttttttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGGTCT

Basic information

species Glycine max
transcript GLYMA10G35270.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35270.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0019g04670.t01 (Vitis vinifera), 3'ss of exon 5
gtgggtttctag---ttgaatatacaccactgaaatactttgtctttatttatgtcttggaagatttcattttgtcttttttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGGTCT
|| || || |     || || ||      |  |   |  ||   | | |   | ||   ||| || |     ||  | ||||||| ||||||||||||||||  || |||  |||| |||| | ||| |||||||| |||||||| |||||||||||| |||| |  |||||||||||||| |||    
gtaggcttgtgaattttcaacatgggatgcacatggatgtttcttgtgtagttatcaatgaacatataggaatgggtctttttttccagTATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTG----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactttgtctttatttatgtcttggaagatttcattttgtcttttttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTGGTCT
                              tttcattttgtctttt  CT-rich tract
                             atttcattttgtcttt  TA-rich tract