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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttctagttgaatatacaccactgaaatactttgtctttatttatgtcttggaagatttcattttgtcttttttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTG

Basic information

species Glycine max
transcript GLYMA10G35270.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35270.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0019g04670.t01 (Vitis vinifera), 3'ss of exon 5
gtgggtttctag---ttgaatatacaccactgaaatactttgtctttatttatgtcttggaagatttcattttgtcttttttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTG
|| || || |     || || ||      |  |   |  ||   | | |   | ||   ||| || |     ||  | ||||||| ||||||||||||||||  || |||  |||| |||| | ||| |||||||| |||||||| |||||||||||| |||| |  |||||||||||||| |||
gtaggcttgtgaattttcaacatgggatgcacatggatgtttcttgtgtagttatcaatgaacatataggaatgggtctttttttccagTATTATGAAGGAATTCGGGCAGCATGGCTGGCAAAGAAATCTGGGCAGAGCTATCGTCATCCATTCAACGTTGGTGTTTACAAAAATATTACCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930152|gb|BU547291.1|BU547291
EST:     TTTTTGGATGGCATGTCTACCTTATCCTTCATAACATGACAACCATAGAG                         TATTATGAAGGAAAGCGTGCAAAATGGNNNGCTATGAAGTCTGGGCAAAGC
genomic: TTTTTGGATGGCATGTCTACCTTATCCTTCATAACATGACAACCATAGAGgtgggtttct ... tttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGC
EST: gi|193649644|gb|FK596781.1|FK596781
EST:     TTTTGGATGGCATGTCTACCTTATCCTTCATAACATGACAACCATAGAG                         TATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGC
genomic: TTTTGGATGGCATGTCTACCTTATCCTTCATAACATGACAACCATAGAGgtgggtttct ... tttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGC
EST: gi|193643011|gb|FK588165.1|FK588165
EST:     TTTTTGGATGGCATGTCTACCTTATCCTTCATAACATGACAACCATAGAG                         TATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGC
genomic: TTTTTGGATGGCATGTCTACCTTATCCTTCATAACATGACAACCATAGAGgtgggtttct ... tttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactttgtctttatttatgtcttggaagatttcattttgtcttttttttttcagTATTATGAAGGAAAGCGTGCAAAATGGTTGGCTATGAAGTCTGGGCAAAGCTATCGGCATCCATTCAACATTGGCGCATACAAAAATATTACTTTG
                              tttcattttgtctttt  CT-rich tract
                             atttcattttgtcttt  TA-rich tract