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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgcctgtcatttttgaatgctaagcattatttaattatcagtatagttttcttttgtgaaatattgtatgtgcatgaatcataaatactgtgatatatttcatttttcagTCCCACTTTGAGGGGCATGGCTCTTGTGTCCTTCTTTTATGAGCTGGGAATGTCAGGCATAAGCAGTGTTTTGCTG

Basic information

species Glycine max
transcript GLYMA10G34820.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389241|gb|CA852448.1|CA852448
EST:     CGACAAAGATATATATCTATGAGGAGAGCTGCGGAAATAGTAATTTTCAG                         TCCCACTTTGAGGGGCTTGGCTCTTGTGTCCTTCTTTTATGAGCTGGGAAT
genomic: CGACAAAGATATATATCTATGAGGAGAGCTGCGGAAATAGTAATTTTCAGgttgcctgtc ... catttttcagTCCCACTTTGAGGGGCATGGCTCTTGTGTCCTTCTTTTATGAGCTGGGAAT
EST: gi|151406306|gb|EV276121.1|EV276121
EST:     ATGAGGAGAGCTGCGGAAATAGTAATTTTCAG                         TCCCACTTTGAGGGGCATGGCTCTTGTGTCCTTCTTTTATGAGCTGGGAAT
genomic: ATGAGGAGAGCTGCGGAAATAGTAATTTTCAGgttgcctgtc ... catttttcagTCCCACTTTGAGGGGCATGGCTCTTGTGTCCTTCTTTTATGAGCTGGGAAT
EST: gi|18726842|gb|BM523788.1|BM523788
EST:     GACAAAGATATATATCTATGAGGAGAGCTGCGGAAATAGTAATTTTCAG                         TCCCACTTTGAGGGGCATGGCTCTTGTGTCCTTCTTTTATGAGCTGGGAAT
genomic: GACAAAGATATATATCTATGAGGAGAGCTGCGGAAATAGTAATTTTCAGgttgcctgtc ... catttttcagTCCCACTTTGAGGGGCATGGCTCTTGTGTCCTTCTTTTATGAGCTGGGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaaatattgtatgtgcatgaatcataaatactgtgatatatttcatttttcagTCCCACTTTGAGGGGCATGGCTCTTGTGTCCTTCTTTTATGAGCTGGGAATGTCAGGCATAAGCAGTGTTTTGCTG
                                          tttcatttttc  CT-rich tract
                         ataaatactgtgatat  TA-rich tract