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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcccttgcctttataatttttaacactggagcttagtttatgttagcgttgcctaaagctcaatttatatagGTGGCCATTGTTGTTGGTGGTCGTAACTTCTTTTGTGGAGATGCATGGGTGTCTGCTACCGGGTTAGATAGACCTACGGCATACCAAATAGG

Basic information

species Glycine max
transcript GLYMA10G34520.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34520.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0074g00240.t01 (Vitis vinifera), 3'ss of exon 3
gtattccct-tgcctttataatttttaacactg---gagcttagtttatgttagcgttgcctaaagctcaat------------ttatatagGTGGCCATTGTTGTTGGTGGTCGTAACTTCTTTTGTGGAGATGCATGGGTGTCTGCTACCGGGTTAGATAGACCTACGGCATACCAAATAGG
|| || | | | |  || |   ||  | ||||    |    |||||  | | |       || ||| | | |            ||  | ||||||| ||||||||||| |||||||||||||||||||| ||  ||||||| |||||||| ||  ||||||||||||| ||||||||||| ||
gtgttgcttgtactgttgtctcttacagcactacctgtttctagttgttttcatttgcatcttaagatgattatttttacatgatttcacagGTGGCAATTGTTGTTGGAGGTCGTAACTTCTTTTGTGGGGACTCATGGGTATCTGCTACTGGTCTAGATAGACCTACAGCATACCAAATTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaacactggagcttagtttatgttagcgttgcctaaagctcaatttatatagGTGGCCATTGTTGTTGGTGGTCGTAACTTCTTTTGTGGAGATGCATGGGTGTCTGCTACCGGGTTAGATAGACCTACGGCATACCAAATAGG
                                          tcaatttatata  TA-rich tract