Sequence
atgc intronic sequence ATGC exonic sequencegtaaatagaagcaatgttgaagctgcttttataagttttcttttatatagtatttatatatattttttatttttgtattttttctagATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGG
Basic information
species | Glycine max |
transcript | GLYMA10G34430.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G10540.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaaatagaagcaatgttgaagctgcttttataagttttcttttatatagtatttatatatattttttatttttgtattttttctagATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGG
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----gtaatatgaagttcatgatcctttttctatattcttgagcttaaggtcttttcgatagttgtgtaaacttgtgaattatgcagATGATAAGGCGTGCACTTTTGTCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAACTCCTCTCCAGCAACGTTCGG
upper sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G04510.2 (Arabidopsis thaliana), 3'ss of exon 5
----------------------------gtaaatagaagcaatgttgaagctgcttttataagttttcttttatatagtattta-tatatattttttatttttgtattttttctagATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGG
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gtaacatgaccgtccataatcctttctggtatctctgagc---tttaaggtcttatcaataattattgtcagattctgctttaagcctgtctctgtaaaactggtgacgtatacagACGATAAGGCGTGCACTTTTGTCGGGACTGCTGCATATGTTCCTCCAGAAGTTCTCAACTCCTCTCCCGCAACTTTCGG
upper sequence: GLYMA10G34430.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------------------------------------------------------------gtaaatagaagcaatgttgaagctgcttttataagttttcttttatat-agtatttatatatattttttatttttgtattttttctagATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGG
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gtaagactatcatcctgtcattttttgataggtaaatttttctccccattgggacttgaacttccctcccacaaaccctccccatccctttaccacttgaggcaggcctcaagaacggctatcatcctgtcatgatgatgctattttatcaatgactaattaaccaaaaaccatatatttcctgtccagATGATAAGGCTTGTACATTTGTGGGAACTGCTGCTTATGTCCCTCCAGAAGTTCTCAATTCTTCTCCTGCAACGTTTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193642650|gb|FK594104.1|FK594104EST: GAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATGCAGCATCAG ATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGG
genomic: GAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATGCAGCATCAGgtaaatagaa ... ttttttctagATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGG
EST:
gi|193447022|gb|FK413693.1|FK413693EST: GAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATGCAGCATCAG ATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGG
genomic: GAAGCCTATGCAGGATAGCCAAATAACTGTCCTTCCAAATGCAGCATCAGgtaaatagaa ... ttttttctagATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagttttcttttatatagtatttatatatattttttatttttgtattttttctagATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGG
ttttttatttttgtat CT-rich tract
ttttatatagtattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatagaagcaatgttgaagctgcttttataagttttcttttatatagtatttatatatattttttatttttgtattttttctagATGACAAAGCCTGCACTTTTGTGGGAACAGCTGCTTATGTTCCTCCAGAGGTTCTTAATTCCTCTCCAGCAACTTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT