1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgagaaaactacttgtctttttcatgtttaaaaccttgcatccttaattggtgatttgctttatcagattgaacttacgtatattctgttctttgccagGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAG
species | Glycine max |
transcript | GLYMA10G34220.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAATTACAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAG GAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGAEST: gi|208300205|gb|GE098892.1|GE098892
genomic: TGAATTACAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAGgttcttccat ... tctttgccagGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGA
EST: TGAATTACAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAG GAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGAEST: gi|192308183|gb|FK001281.1|FK001281
genomic: TGAATTACAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAGgttcttccat ... tctttgccagGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGA
EST: CAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAG GAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGAEST: gi|192303155|gb|FG997731.1|FG997731
genomic: CAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAGgttcttccat ... tctttgccagGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGA
EST: CAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAG GAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGAEST: gi|7235040|gb|AW570431.1|AW570431
genomic: CAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAGgttcttccat ... tctttgccagGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGA
EST: TGAATTACAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAG GAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGA
genomic: TGAATTACAGACCAAATGGTGCTGCTGGAGGAAAGCTCCAGAACAGCAAGgttcttccat ... tctttgccagGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGA
taattggtgatttgctttatcagattgaacttacgtatattctgttctttgccagGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAG
aacttac putative branch site (score: 2)
ttctgttctttgcc putative PPT
tatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgagaaaactacttgtctttttcatgtttaaaaccttgcatccttaattggtgatttgctttatcagattgaacttacgtatattctgttctttgccagGAGGAGCGGAGTAACTCATTGACCATGGGTGTTGCAGATGAGCATATAGGATTGGTTGTTGGTCGTGGTGGAAGGAATATTATGGAAATTAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA