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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gctagtatctatacaaggattttataatgggagaaaatcataaaattatttcatatccatgcatagcatattataacatggtaacacttagaaaacttacaatattcattgaacttcttgcagTTCGATACATTGACATTGAAACATGCCAGTTTGGGGTTATTAAGACTTCTGGTGATGTTCCA

Basic information

species Glycine max
transcript GLYMA10G34180.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336966|gb|GR843145.1|GR843145
EST:     ACTGCTTCTTCTTGGTGGCAATTCAAGGGAATCTTCTGCTGAGCTAACAG                         TTCGATACATTGACATTGAAACATGCCAGTTTGGGGTTATTAAGACTTCTG
genomic: ACTGCTTCTTCTTGGTGGCAATTCAAGGGAATCTTCTGCTGAGCTAACAGgctagtatct ... cttcttgcagTTCGATACATTGACATTGAAACATGCCAGTTTGGGGTTATTAAGACTTCTG
EST: gi|151395590|gb|EV265467.1|EV265467
EST:     ACTGCTTCTTCTTGGTGGCAATTCAAGGGAATCTTCTGCTGAGCTAACAG                         TTCGATACATTGACATTGAAACATGCCAGTTTGGGGTTATTAAGACTTCTG
genomic: ACTGCTTCTTCTTGGTGGCAATTCAAGGGAATCTTCTGCTGAGCTAACAGgctagtatct ... cttcttgcagTTCGATACATTGACATTGAAACATGCCAGTTTGGGGTTATTAAGACTTCTG
EST: gi|21285502|gb|BQ473373.1|BQ473373
EST:     ACTGCTTCTTCTTGGTGGCAATTCAAGGGAATCTTCTGCTGAGCTAACAG                         TTCGATACATTGACATTGAAACATGCCAGTTTGGGGTTATTAAGACTTCTG
genomic: ACTGCTTCTTCTTGGTGGCAATTCAAGGGAATCTTCTGCTGAGCTAACAGgctagtatct ... cttcttgcagTTCGATACATTGACATTGAAACATGCCAGTTTGGGGTTATTAAGACTTCTG
EST: gi|193712601|gb|FK649708.1|FK649708
EST:     ACTGCTTCTTCTTGGTGGCAATTCAAGGGAATCTTCTGCTGAGCTAACAG                         TTCGATACATTGACATTGAAACATGCCAGTTTGGGGTTATTAAGACTTCTG
genomic: ACTGCTTCTTCTTGGTGGCAATTCAAGGGAATCTTCTGCTGAGCTAACAGgctagtatct ... cttcttgcagTTCGATACATTGACATTGAAACATGCCAGTTTGGGGTTATTAAGACTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattataacatggtaacacttagaaaacttacaatattcattgaacttcttgcagTTCGATACATTGACATTGAAACATGCCAGTTTGGGGTTATTAAGACTTCTGGTGATGTTCCA
                         aacttac  putative branch site (score: 2)
                                             cttcttgc  putative PPT
                       aaaacttacaatatt  TA-rich tract