1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aactgaaaatgtgtaatttactgttttattaaagaaattatctctatatcttataaatgtaccctaacacttactatttttaagaattatggtattgcagGCAGAGAAACACTTGCAGATTCGCCAGGATGCAGAGCGGAGATACATGGGCATGCTTGAGCGAGCGTGTAAGATGTTGGCAGATCAATTTATTGGGGATG
species | Glycine max |
transcript | GLYMA10G34050.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACTTACTAGTGGAG GCAGAGAAACACTTGCAGATTCGCCAGGATGCAGAGCGGAGATACATGGGCEST: gi|192305738|gb|FG995372.1|FG995372
genomic: CACTTACTAGTGGAGgtaaatttcc ... ggtattgcagGCAGAGAAACACTTGCAGATTCGCCAGGATGCAGAGCGGAGATACATGGGC
EST: CATTAAGAGCTCAGATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAG GCAGAGAAACACTTGCAGATTCGCCAGGATGCAGAGCGGAGATACATGGGCEST: gi|192305739|gb|FG995373.1|FG995373
genomic: CATTAAGAGCTCAGATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGgtaaatttcc ... ggtattgcagGCAGAGAAACACTTGCAGATTCGCCAGGATGCAGAGCGGAGATACATGGGC
EST: ATTAAAGAGCTCAGATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAG GCAGAGAAACACTTGCAGATTCGCCAGGATGCAGAGCGGAGATACATGGGC
genomic: ATT-AAGAGCTCAGATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGgtaaatttcc ... ggtattgcagGCAGAGAAACACTTGCAGATTCGCCAGGATGCAGAGCGGAGATACATGGGC
atatcttataaatgtaccctaacacttactatttttaagaattatggtattgcagGCAGAGAAACACTTGCAGATTCGCCAGGATGCAGAGCGGAGATACATGGGCATGCTTGAGCGAGCGTGTAAGATGTTGGCAGATCAATTTATTGGGGATG
cacttac putative branch site (score: 2)
acttactatttttaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgaaaatgtgtaatttactgttttattaaagaaattatctctatatcttataaatgtaccctaacacttactatttttaagaattatggtattgcagGCAGAGAAACACTTGCAGATTCGCCAGGATGCAGAGCGGAGATACATGGGCATGCTTGAGCGAGCGTGTAAGATGTTGGCAGATCAATTTATTGGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctaaca