Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttttccatgctctcatcaataatgttcttttggtattcaaaatgcttttgtgacatagtgaatgactaaatgctctacatacaggtagCGATGAAGCTTGCTCCTGATAGGAAGAAATTCATGGAGGTGATACAAGGCACTGGTGATATCAGTGCTGATATACAGAAATTTTGTACTGACTTTTCTCC

Basic information

species Glycine max
transcript GLYMA10G32590.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32590.3 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g26460.1 (Oryza sativa), 3'ss of exon 5
---------gtaatgttttccatgctctcatcaataatg-ttcttttggtattcaaaatgcttttgtgacatagtgaatgacta--aatgctctacatacaggtagCGATGAAGCTTGCTCCTGATAGGAAGAAATTCATGGAGGTGATACAAGGCACTGGTGATATCAGTGCTGATATACAGAAATTTTGTACTGACTTTTCTCC
          || | || |         ||   ||  |   |  | |||| ||  ||    | || | | |||| || |  |||  ||| |   |  | ||||| || || ||||||||||| || |||||||||||||||||| | ||    ||| | ||||||||||  || || ||  |||| |||||| |  |||||     
tgaacatgattagtcttctttccatggccacagattgtaactagtatggtcttgcaagca-tattattatatag-gagtatctaacaatccctgagtttcagGTTGCCATAAAGCTTGCTCCAGACAGGAAGAAATTCATGGAGATCATTAGTGGCTCAGGTGATATCAACGCAGACATCGAGAAGTTTTGTGC-AACTTTCT---

upper sequence: GLYMA10G32590.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0049g01330.t01 (Vitis vinifera), 3'ss of exon 5
gtaatgttttccatgctctcatcaataatgttcttttggtattcaaaatgctt--ttgtgacatagtgaatgactaaatgctctacatacaggta---------gCGATGAAGCTTGCTCCTGATAGGAAGAAATTCATGGAGGTGATACAAGGCACTGGTGATATCAGTGCTGATATACAGAAATTTTGTACTGACTTTTCTCC
 |    || ||  |  |    | || |   ||||| |     |  || |      || | ||||   || |  ||        || |||| ||||         || |||||||||||||| ||||||||||| |||||||| ||||||   || || |||||| ||| |||||| ||  ||   ||||| ||   ||| |    
-ttcaattctctgttttacagttaaaataattcttgtatcccttgaattagccaattttaacatctggactttcttggcttgttatatactggtataacagCTTGCTATGAAGCTTGCTCCAGATAGGAAGAAGTTCATGGACGTGATATCGGGTACAGGTGATGTCAATGCTGACATGGAGGCTTTTTGCACAAGCTTCT----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208167521|gb|GD965159.1|GD965159
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|208167521|gb|GD965159.1|GD965159
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|208167521|gb|GD965159.1|GD965159
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|208167521|gb|GD965159.1|GD965159
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|208167521|gb|GD965159.1|GD965159
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151408958|gb|EV278766.1|EV278766
EST:     ACAAGACTCTAAAGAAGCGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151408958|gb|EV278766.1|EV278766
EST:     ACAAGACTCTAAAGAAGCGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151408958|gb|EV278766.1|EV278766
EST:     ACAAGACTCTAAAGAAGCGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151408958|gb|EV278766.1|EV278766
EST:     ACAAGACTCTAAAGAAGCGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151408958|gb|EV278766.1|EV278766
EST:     ACAAGACTCTAAAGAAGCGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151409417|gb|EV279225.1|EV279225
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151409417|gb|EV279225.1|EV279225
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151409417|gb|EV279225.1|EV279225
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151409417|gb|EV279225.1|EV279225
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151409417|gb|EV279225.1|EV279225
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|209707561|gb|BW680931.1|BW680931
EST:     ACAAGACTCTAAAGAAGGGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|209707561|gb|BW680931.1|BW680931
EST:     ACAAGACTCTAAAGAAGGGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|209707561|gb|BW680931.1|BW680931
EST:     ACAAGACTCTAAAGAAGGGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|209707561|gb|BW680931.1|BW680931
EST:     ACAAGACTCTAAAGAAGGGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|209707561|gb|BW680931.1|BW680931
EST:     ACAAGACTCTAAAGAAGGGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|209707562|gb|BW680932.1|BW680932
EST:     ACAAGACTCTAAAGAAGGGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|209707562|gb|BW680932.1|BW680932
EST:     ACAAGACTCTAAAGAAGGGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|209707562|gb|BW680932.1|BW680932
EST:     ACAAGACTCTAAAGAAGGGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|298197177|gb|HO041920.1|HO041920
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|298197177|gb|HO041920.1|HO041920
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|298197177|gb|HO041920.1|HO041920
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|298197177|gb|HO041920.1|HO041920
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|298197177|gb|HO041920.1|HO041920
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192324104|gb|FK019395.1|FK019395
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192324104|gb|FK019395.1|FK019395
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192324104|gb|FK019395.1|FK019395
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192324104|gb|FK019395.1|FK019395
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192324104|gb|FK019395.1|FK019395
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192295514|gb|FG988088.1|FG988088
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192295514|gb|FG988088.1|FG988088
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192295514|gb|FG988088.1|FG988088
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192295514|gb|FG988088.1|FG988088
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192295514|gb|FG988088.1|FG988088
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151411234|gb|EV281045.1|EV281045
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151411234|gb|EV281045.1|EV281045
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151411234|gb|EV281045.1|EV281045
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151411234|gb|EV281045.1|EV281045
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151411234|gb|EV281045.1|EV281045
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|10231207|gb|BE800023.1|BE800023
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|10231207|gb|BE800023.1|BE800023
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|10231207|gb|BE800023.1|BE800023
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|12773166|gb|BG238093.1|BG238093
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|12773166|gb|BG238093.1|BG238093
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|12773166|gb|BG238093.1|BG238093
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|213615020|gb|DB957058.1|DB957058
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|213615020|gb|DB957058.1|DB957058
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|213615020|gb|DB957058.1|DB957058
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|213615020|gb|DB957058.1|DB957058
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|213615020|gb|DB957058.1|DB957058
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|254340633|gb|GR854361.1|GR854361
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|254340633|gb|GR854361.1|GR854361
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|254340633|gb|GR854361.1|GR854361
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|254340633|gb|GR854361.1|GR854361
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|254340633|gb|GR854361.1|GR854361
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151412396|gb|EV282208.1|EV282208
EST:     CAAGGCTCTAAAGAAGTGGCATGGCTGGCTTTGCAAGTTCAAGCTTCAGT                         G
genomic: CAAGACTCTAAAGAAGTGGCATGGCTGGCTT-GCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151412396|gb|EV282208.1|EV282208
EST:     CAAGGCTCTAAAGAAGTGGCATGGCTGGCTTTGCAAGTTCAAGCTTCAGT                         G
genomic: CAAGACTCTAAAGAAGTGGCATGGCTGGCTT-GCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151412396|gb|EV282208.1|EV282208
EST:     CAAGGCTCTAAAGAAGTGGCATGGCTGGCTTTGCAAGTTCAAGCTTCAGT                         G
genomic: CAAGACTCTAAAGAAGTGGCATGGCTGGCTT-GCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151412396|gb|EV282208.1|EV282208
EST:     CAAGGCTCTAAAGAAGTGGCATGGCTGGCTTTGCAAGTTCAAGCTTCAGT                         G
genomic: CAAGACTCTAAAGAAGTGGCATGGCTGGCTT-GCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|151412396|gb|EV282208.1|EV282208
EST:     CAAGGCTCTAAAGAAGTGGCATGGCTGGCTTTGCAAGTTCAAGCTTCAGT                         G
genomic: CAAGACTCTAAAGAAGTGGCATGGCTGGCTT-GCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|254340634|gb|GR854362.1|GR854362
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|254340634|gb|GR854362.1|GR854362
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|254340634|gb|GR854362.1|GR854362
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|58025262|gb|CX712003.1|CX712003
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|58025262|gb|CX712003.1|CX712003
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|58025262|gb|CX712003.1|CX712003
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTGT                        
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCA--GTgtaatgtttt ... atacaggta
EST: gi|298173249|gb|HO020233.1|HO020233
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|298173249|gb|HO020233.1|HO020233
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|298173249|gb|HO020233.1|HO020233
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|298173249|gb|HO020233.1|HO020233
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|298173249|gb|HO020233.1|HO020233
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192326692|gb|FK018879.1|FK018879
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192326692|gb|FK018879.1|FK018879
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192326692|gb|FK018879.1|FK018879
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192326692|gb|FK018879.1|FK018879
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-
EST: gi|192326692|gb|FK018879.1|FK018879
EST:     ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGT                         G
genomic: ACAAGACTCTAAAGAAGTGGCATGGCTGGCTTGCAAGTTCAAGCTTCAGTgtaatgtttt ... atacaggtag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcaaaatgcttttgtgacatagtgaatgactaaatgctctacatacaggtagCGATGAAGCTTGCTCCTGATAGGAAGAAATTCATGGAGGTGATACAAGGCACTGGTGATATCAGTGCTGATATACAGAAATTTTGTACTGACTTTTCTCC
                              gactaaa  putative branch site (score: 2)
                               actaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgttttccatgctctcatcaataatgttcttttggtattcaaaatgcttttgtgacatagtgaatgactaaatgctctacatacaggtagCGATGAAGCTTGCTCCTGATAGGAAGAAATTCATGGAGGTGATACAAGGCACTGGTGATATCAGTGCTGATATACAGAAATTTTGTACTGACTTTTCTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT