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...gaatatttaagaaaattgcattgtgatagtttttttcttcctttttttatactattgtgaagaaccatgattactgaagattacattttgccttttgtagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCG
species | Glycine max |
transcript | GLYMA10G31310.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTTCATACTTTAGTAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCGEST: gi|193624268|gb|FK574260.1|FK574260
genomic: ATTTCATACTTTAG-AACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttttgtagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCG
EST: TTAGAACTCGAACTGCAGCGCCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCTGEST: gi|207817396|gb|GD789357.1|GD789357
genomic: TTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttttgtagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCG
EST: CATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTCTGGAGGTACTACAGCAGGCCTCCGEST: gi|193589887|gb|FK545251.1|FK545251
genomic: CATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttttgtagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCG
EST: CATTTCATACTTTAGAACTCGAACTGCAGCGGCCGCTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCGEST: gi|208189229|gb|GD983633.1|GD983633
genomic: CATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttttgtagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCG
EST: CATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCGATEST: gi|9898819|gb|BE607787.1|BE607787
genomic: CATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttttgtagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCGAT
EST: CATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAG GATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCGEST: gi|208316633|gb|GE115779.1|GE115779
genomic: CATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttttgtagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCG
EST: CATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAG GNTGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCG
genomic: CATTTCATACTTTAGAACTCGAACTGCAGCGGCCGTTTGTGCTCAGAAAGgtgtttctct ... ccttttgtagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCG
tttatactattgtgaagaaccatgattactgaagattacattttgccttttgtagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCG
ttttgcctttt CT-rich tract
attacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatatttaagaaaattgcattgtgatagtttttttcttcctttttttatactattgtgaagaaccatgattactgaagattacattttgccttttgtagGATGTTTGGGATTCTTTGGCTTTGGAGGTACTACAGCAGGCCTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - aagaaaa
- - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgat