Sequence
atgc intronic sequence ATGC exonic sequencegtaataaacaaaatagccaacttattatgtccagaggttttgggaaaataaaattttagctttatgtcataattgttctttagaaacctaaggtgctggcaatgactgaaccctgtgtaacagGCCTCTATGATATGACCATGCTTCGATTTGAGCCAGACAAGCAAGTGGGATTCAGGGAATACATGCGGTCAGATGGAACACGATCATATTTCTTTTGTTT
Basic information
species | Glycine max |
transcript | GLYMA10G31030.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G31030.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g23169.1 (Oryza sativa), 3'ss of exon 5
gtaataaacaaaatagccaacttattatgtccagaggttttgggaaaataaaattttagctttatgtcataattgttctttagaaacctaaggtgctggcaatgactgaaccctgtgtaacagGCCTCTATGATATGACCATGCTTCGATTTGAGCCAGACAAGCAAGTGGGATTCAGGGAATACATGCGGTCAGATGGAACACGATCATATTTCTTTTGTTT
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-----------------------------------------------gtaatgccctggccatactattgtattatatatcattgatcaataatcttgctgacatctctttattgtat--tagGACTCTATGACATGACAATGCTTCGGTTTTTACCTCACCAAAGAGTGGGATTCCGGGAATACATGCGCTCAGATGGCACCCTTTCATACTTCTTCACATT
upper sequence: GLYMA10G31030.2 (Glycine max), 3'ss of exon 5
lower sequence: AT1G54650.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaataaacaaaatagccaacttattatgtccagaggttttgggaaaataaaattttagctttatgtcataattgttctttagaaacctaaggtgctggcaatgactgaaccctgtgtaacagGCCTCTATGATATGACCATGCTTCGATTTGAGCCAGACAAGCAAGTGGGATTCAGGGAATACATGCGGTCAGATGGAACACGATCATATTTCTTTTGTTT
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------------------------------------------gtaaggtcactattaagagctgtatcacatatgtttacaaataa--agagaaactaata--ggctaaacaccttg--acagGATTATATGACATGACTATGCTACGGTTTGAGCCAGAGAAACGTGTAGGATTTAGGGAATATGTGCGGTCTGATGGAACCCTTTCCTATTTCTTTTGTCT
upper sequence: GLYMA10G31030.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0081g00660.t01 (Vitis vinifera), 3'ss of exon 5
gtaataaacaaaatagccaacttattatgtccagaggttttgggaaaataaaattttagctttatgtcataattgttctttagaaacctaaggtgctggcaatgactgaaccctgtgtaacagGCCTCTATGATATGACCATGCTTCGATTTGAGCCAGACAAGCAAGTGGGATTCAGGGAATACATGCGGTCAGATGGAACACGATCATATTTCTTTTGTTT
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-----------------------gtaatggcctgaaaaagaggcagtatca----ttagttctgtaacatatttgattattg-----ctgatgatatttctatgatgaaaccc--------agGCCTATATGACATGACTATGCTTCGATTTGAGCCAGAAAAAAGAGTGGGTTTCAGGGAGTACATGCGCTCTGACGGAACTCGATCTTATTTCTTCTGTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51335064|gb|CO978930.1|CO978930EST: ATGTTTTATTGTGTTAAAGCCAGGAGGCATGGNNNNNNNNCGGGACTATG GCCTCTATGATATGACCATGCTTCGATTTGAGCCAGACAAGCAAGTGGGAT
genomic: ATGTTTTATTGTGTTAAAGCCAGGAGGCATGGTTTTTTTTCGGGACTATGgtaataaaca ... tgtgtaacagGCCTCTATGATATGACCATGCTTCGATTTGAGCCAGACAAGCAAGTGGGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataattgttctttagaaacctaaggtgctggcaatgactgaaccctgtgtaacagGCCTCTATGATATGACCATGCTTCGATTTGAGCCAGACAAGCAAGTGGGATTCAGGGAATACATGCGGTCAGATGGAACACGATCATATTTCTTTTGTTT
tttagaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaataaacaaaatagccaacttattatgtccagaggttttgggaaaataaaattttagctttatgtcataattgttctttagaaacctaaggtgctggcaatgactgaaccctgtgtaacagGCCTCTATGATATGACCATGCTTCGATTTGAGCCAGACAAGCAAGTGGGATTCAGGGAATACATGCGGTCAGATGGAACACGATCATATTTCTTTTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA