1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagcaattttctttgtcaatgatttgaaattatgctgttaaatgtaaccttttgtatgaccaacttaattcttctattgtttacatggcagAATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAGTGACAGGCTGGAATCTGTGTAAATCAGGTTAACTAAGTAGAGAACACTT
species | Glycine max |
transcript | GLYMA10G30900.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAG AATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAGEST: gi|7284795|gb|AW597220.1|AW597220
genomic: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattt ... tacatggcagAATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAG
EST: GTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAG AATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAGEST: gi|15664653|gb|BI702024.1|BI702024
genomic: GTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattt ... tacatggcagAATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAG
EST: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAG AATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAGEST: gi|193355864|gb|FK323473.1|FK323473
genomic: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattt ... tacatggcagAATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAG
EST: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAG AATCACATTCAAAAGAAAACCGAAAAATGGCAAGGAAAGGTEST: gi|193457410|gb|FK423176.1|FK423176
genomic: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattt ... tacatggcagAATCACATTCAAAAGAAA-CCGAAAA-TGGCAAGGAAAGGT
EST: AGAGGACAGATTATGAAGCACTGGAGAAACAGAAG AATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAGEST: gi|6341837|gb|AW164661.1|AW164661
genomic: AGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattt ... tacatggcagAATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAG
EST: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAG AATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAGEST: gi|207793984|gb|GD763874.1|GD763874
genomic: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattt ... tacatggcagAATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAG
EST: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAG AATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAG
genomic: AGAGTAAGTGGAGGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGgtagcaattt ... tacatggcagAATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAG
gttaaatgtaaccttttgtatgaccaacttaattcttctattgtttacatggcagAATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAGTGACAGGCTGGAATCTGTGTAAATCAGGTTAACTAAGTAGAGAACACTT
ttcttctattgttt CT-rich tract
ttaattcttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcaattttctttgtcaatgatttgaaattatgctgttaaatgtaaccttttgtatgaccaacttaattcttctattgtttacatggcagAATCACATTCAAAAGAAACCGAAAATGGCAAGGAAAGGTGTGCTGCACAAGTGACAGGCTGGAATCTGTGTAAATCAGGTTAACTAAGTAGAGAACACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA