1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagttcaataattttacagggaaattaatagcaggtagatacttcctgaaagactgatgttgaaatctagtttatctattttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTCCTTTGTGCCGCTGCACTTGTTGCCTTGCAGGAAAATGTTGGGAAGCTGG
species | Glycine max |
transcript | GLYMA10G30880.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTCEST: gi|14258404|gb|BG881312.1|BG881312
genomic: TCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAGgtagttcaat ... ttttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC
EST: GCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTCEST: gi|21993634|gb|BQ785162.1|BQ785162
genomic: GCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAGgtagttcaat ... ttttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC
EST: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAG GCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC
genomic: GTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAAGAATTTTATTGCCAAGgtagttcaat ... ttttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTC
ggtagatacttcctgaaagactgatgttgaaatctagtttatctattttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTCCTTTGTGCCGCTGCACTTGTTGCCTTGCAGGAAAATGTTGGGAAGCTGG
gactgat putative branch site (score: 3)
tttatctatttttttt putative PPT
ttgaaatctagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttcaataattttacagggaaattaatagcaggtagatacttcctgaaagactgatgttgaaatctagtttatctattttttttagGCTAGACGACTCCGGAAAACCTTAGGAGGTGGAATGAGACAGATTGGCCTCCTTTGTGCCGCTGCACTTGTTGCCTTGCAGGAAAATGTTGGGAAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG