1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attatattctttatgtgtactttttgctgagaacttaccaaattgattatattttagtttcctattgtcttataattttatttttctaatttttgagcagCTGATTTAAATGAGTTGAATGTTCATGCTAATGAGTTCACTTATGAGGGATCTGTTTCCACGGGTGAAATTGTTAAGAAAGTGGAGTCTCCCATTGACAA
species | Glycine max |
transcript | GLYMA10G30680.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTTTCATACTGCTGGTGTGGTGACCTCATTAGGTCTACTTTCTCTTCCG CTGATTTAAATGAGTTGAATGTTCATGCTAATGAGTTCACTTATGAGGGAT
genomic: TCTTTCATACTGCTGGTGTGGTGACCTCATTAGGTCTACTTTCTCTTCCGgtacatattc ... ttttgagcagCTGATTTAAATGAGTTGAATGTTCATGCTAATGAGTTCACTTATGAGGGAT
attatattttagtttcctattgtcttataattttatttttctaatttttgagcagCTGATTTAAATGAGTTGAATGTTCATGCTAATGAGTTCACTTATGAGGGATCTGTTTCCACGGGTGAAATTGTTAAGAAAGTGGAGTCTCCCATTGACAA
ttctaat putative branch site (score: 2)
tttttctaattttt CT-rich tract
tttcctattgtcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatattctttatgtgtactttttgctgagaacttaccaaattgattatattttagtttcctattgtcttataattttatttttctaatttttgagcagCTGATTTAAATGAGTTGAATGTTCATGCTAATGAGTTCACTTATGAGGGATCTGTTTCCACGGGTGAAATTGTTAAGAAAGTGGAGTCTCCCATTGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - -tgtgtac
- - - - - - - - - - - -ttgctga
- - - - - - - - - - - - - - - - -cttacca