Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttcgtagtttataccttgttctttcccagtttttgatcttgataaacagcgtcaagattctatgaaatacttaacagtatctcaattgtgatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCTGTGTATGGGTCTTCCAAAGTGGTGC

Basic information

species Glycine max
transcript GLYMA10G30400.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30400.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 3'ss of exon 6
--------------------------cttcgtagtttatacc--ttgttctttcccagt-----ttttgatcttgataaacagcgtcaagattctatgaaatacttaacagtatc--tcaattgtgatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCTGTGTATGGGTCTTCCAAAGTGGTGC
                            ||  |   || |||  |  | |  | || ||     || | | | | |  | ||  | |||||||  |  | | | |    | ||||    |||   ||||    |||| ||| ||||  |||| ||||||||||| ||||||||||| |||||||||||| | || ||  | || ||  | |  || || || ||||| |||||| 
gtatctatccctgttctgctaaatcttctcacatactacaccaatcatgcaatgcctgtaaaaattctcaccgtca-gatcaatgacaagattagaatagacaatacctaatatcgacaaatgacgatga-acagGACGGGCTGAGGTTCACCTACTTCTGGATCAAGGAGCAGATAGAGAAGGAGAAGACCCAGGGCGTCGACATCGCGGGTTACGGCTCATCCAAGGTGGTGT

upper sequence: GLYMA10G30400.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 6
cttcgtagtttatacc-ttgttctttcccagtttttgatcttgataaacagcgtcaagattctatgaa-atacttaacagtatctcaattgtgatgt-tgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCTGTGTATGGGTCTTCCAAAGTGGTGC
            |||  |   | | |  |    | |   ||  ||   ||   |  ||||  |  ||  | |   |   |||    || |    | | || |||||||| || |  |||| ||||||||||| || ||||||||||||||||||||| | || ||  | || ||  | | ||| ||||| ||||| |||||| 
-----------gtactgtcactatcttgctagatatagcctccatcgccatgctggagatgttgggaggacaaacagatgtaaacaaaataccctttgtgcagGATGGGCTGCGGTTCACCTACTTCTGGATCAAAGAGCAGATCGAGAAGGAGAAGACGCAGGGGGTCGACATCGCGGCGTACGGGTCGTCCAAGGTGGTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6847778|gb|AW350068.1|AW350068
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|21594289|gb|BQ610114.1|BQ610114
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|208163416|gb|GD959794.1|GD959794
EST:     TCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: TCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|20813910|gb|BQ298388.1|BQ298388
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|214008441|gb|DB990007.1|DB990007
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|13479505|gb|BG508848.1|BG508848
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|13311333|gb|BG404984.1|BG404984
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|192294959|gb|FG986678.1|FG986678
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|57575074|gb|CX548049.1|CX548049
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|58018643|gb|CX705385.1|CX705385
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|58017048|gb|CX703790.1|CX703790
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|31459284|gb|CD401312.1|CD401312
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|298176590|gb|HO023177.1|HO023177
EST:     ATACACTGATAAAAGAAAAACCTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|8669973|gb|BE191080.1|BE191080
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|13479515|gb|BG508858.1|BG508858
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|6725426|gb|AW309825.1|AW309825
EST:     CTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: CTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|120528817|gb|EH256951.1|EH256951
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTTTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|298191001|gb|HO038480.1|HO038480
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
EST: gi|7587929|gb|AW703735.1|AW703735
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATC
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATC
EST: gi|6846118|gb|AW348408.1|AW348408
EST:     ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAG                         GATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG
genomic: ATACACTGATAAAAGAAAAACTTGGTTGGGCTCCAACTATGAGGTTGAAGgtaataatat ... gatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacagcgtcaagattctatgaaatacttaacagtatctcaattgtgatgttgtagGATGGGTTGAGAATCACATACTTCTGGATTAAGGAGCAGATCGAGAAGGAGAAGGCTCAAGGTATTGATATATCTGTGTATGGGTCTTCCAAAGTGGTGC
                        acttaac  putative branch site (score: 3)
                tatgaaatacttaa  TA-rich tract