1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtttcctctatttcacttgcacactactaccttatttgtttgtattcacgtctcttgactgggtttggattataatgatctaacctgcaattttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTG
species | Glycine max |
transcript | GLYMA10G29250.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAG ATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCAEST: gi|58017156|gb|CX703898.1|CX703898
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
EST: GGCAGGCCCTCAACTGGTCCAG ATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCAEST: gi|120530681|gb|EH258814.1|EH258814
genomic: GGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
EST: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAG ATGTTCATAGGEST: gi|254342561|gb|GR858723.1|GR858723
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGG
EST: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAG ATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCAEST: gi|22525777|gb|BU084588.1|BU084588
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
EST: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAG ATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCAEST: gi|9901285|gb|BE610253.1|BE610253
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
EST: CACAGACGGATGCCACTTTGGTGAAATTGGCAGGCCCTCAACTGGTCCAG ATGTTCATAGGAGATGGAGCAAAACTTGTTGCGTGATGCCTTTCAACTAGCEST: gi|298195294|gb|HO043822.1|HO043822
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTT-CGTGATGCCTTTCAACTAGC
EST: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAG ATGTTCATAGGAGGTGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
genomic: CACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaat ... ttttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCA
tcacgtctcttgactgggtttggattataatgatctaacctgcaattttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTG
atctaac putative branch site (score: 2)
attataatgatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcctctatttcacttgcacactactaccttatttgtttgtattcacgtctcttgactgggtttggattataatgatctaacctgcaattttgtacagATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATTATTTTTATAGATGAAATTGATGCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - -cacacta
- - - - - - - - - - - - - ctacctt
- - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgca