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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcctttttctaaaaggcctctcatgttatatgaacctttcagagtactatgtggtatgtactgactcgtatgtcttgtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG

Basic information

species Glycine max
transcript GLYMA10G28890.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207795641|gb|GD765882.1|GD765882
EST:     AATA-ATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: AATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193623423|gb|FK577825.1|FK577825
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|10842878|gb|BF066239.1|BF066239
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|33390215|gb|CA853422.1|CA853422
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGA
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGA
EST: gi|7147106|gb|AW509028.1|AW509028
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|14259040|gb|BG881948.1|BG881948
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193611626|gb|FK561293.1|FK561293
EST:     AGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: AGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|24135631|gb|BU926141.1|BU926141
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|208257302|gb|GE056717.1|GE056717
EST:     AGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: AGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|298191551|gb|HO039030.1|HO039030
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193355757|gb|FK319530.1|FK319530
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|120529175|gb|EH257309.1|EH257309
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|7233127|gb|AW568477.1|AW568477
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193528649|gb|FK486867.1|FK486867
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193359430|gb|FK327567.1|FK327567
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGAACCCCGAAGACCAAGAAGC
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGA-CCCCGAAG-CCAAGAAGC
EST: gi|19938515|gb|BQ081756.1|BQ081756
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|6481781|gb|AW201052.1|AW201052
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193532236|gb|FK491944.1|FK491944
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|208304581|gb|GE104830.1|GE104830
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAAACAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|6134570|gb|AW132963.1|AW132963
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|208282931|gb|GE078929.1|GE078929
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCG
EST: gi|18735107|gb|BM528567.1|BM528567
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193374876|gb|FK338960.1|FK338960
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCC
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCC
EST: gi|193406567|gb|FK375526.1|FK375526
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193691571|gb|FK629688.1|FK629688
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAG
EST: gi|120492727|gb|EH220894.1|EH220894
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAANG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAA-G
EST: gi|193643994|gb|FK593785.1|FK593785
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|208194548|gb|GD988083.1|GD988083
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACAT
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACAT
EST: gi|193436294|gb|FK399058.1|FK399058
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|151411454|gb|EV281265.1|EV281265
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|208069120|gb|GD869966.1|GD869966
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|207709119|gb|GD690563.1|GD690563
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|207768814|gb|GD740065.1|GD740065
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGGTATGATGACATCCCAAAAGAGCTCC
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGG-TATGATGACATCCCAAAAGAGCTCC
EST: gi|193384654|gb|FK350212.1|FK350212
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|208058762|gb|GD858234.1|GD858234
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAA
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAA
EST: gi|193546097|gb|FK500412.1|FK500412
EST:     CCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: CCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|308097864|gb|HO761035.1|HO761035
EST:     GAGGATAAGAAACCAGAG                         GGGTATGGTGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: GAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|207715665|gb|GD697465.1|GD697465
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCC
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCC
EST: gi|5753695|gb|AI960982.1|AI960982
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|208279821|gb|GE080117.1|GE080117
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAG
EST: gi|18040310|gb|BM308604.1|BM308604
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|208074731|gb|GD870734.1|GD870734
EST:     ATAAGAAACCAGAG                         GGGTTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGG-TATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193700424|gb|FK635053.1|FK635053
EST:     CCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: CCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|8404295|gb|BE059929.1|BE059929
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193732517|gb|FK668059.1|FK668059
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193594586|gb|FK546263.1|FK546263
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|23728381|gb|BU762243.1|BU762243
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193313929|gb|FK282432.1|FK282432
EST:     ATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|19453199|gb|BM954609.1|BM954609
EST:     ATTGGGATGACAAAGAATTTATTCCTGATCCCGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGATCCTGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|120493122|gb|EH221289.1|EH221289
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|208044942|gb|GD840162.1|GD840162
EST:     AGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: AGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|193632487|gb|FK584241.1|FK584241
EST:     ACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|207741492|gb|GD713862.1|GD713862
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
EST: gi|26058830|gb|CA801744.1|CA801744
EST:     ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAG                         GGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
genomic: ATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt ... gtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacctttcagagtactatgtggtatgtactgactcgtatgtcttgtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG
                           tactgac  putative branch site (score: 1)
                                           ttgtattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgcctttttctaaaaggcctctcatgttatatgaacctttcagagtactatgtggtatgtactgactcgtatgtcttgtatttgtagGGGTATGATGACATCCCAAAAGAGCTCCCAGACCCCGAAGCCAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG