1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactacatgttgcctaataccaatgtcctagttaagtttctcctattctccagattgatgatcctagccaattgtgatcctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACTGGATAGTGGAGAGTACAGTTTGACATATGAAACACCAGAAGGAGTGGTT
species | Glycine max |
transcript | GLYMA10G27890.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG ACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACTEST: gi|15338083|gb|BI498739.1|BI498739
genomic: GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAGgtactacatg ... ctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
EST: GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG ACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACTEST: gi|8284127|gb|BE021686.1|BE021686
genomic: GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAGgtactacatg ... ctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
EST: GTTGCCTGATGCAATTTCTGCCAG ACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACTEST: gi|17022014|gb|BM093048.1|BM093048
genomic: GTTGCCTGATGCAATTTCTGCCAGgtactacatg ... ctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
EST: GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAG ACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
genomic: GGATCTTTCCGGAAGGGACTTACCATGTTGCCTGATGCAATTTCTGCCAGgtactacatg ... ctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACT
agtttctcctattctccagattgatgatcctagccaattgtgatcctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACTGGATAGTGGAGAGTACAGTTTGACATATGAAACACCAGAAGGAGTGGTT
gattgat putative branch site (score: 4)
tcctgtt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacatgttgcctaataccaatgtcctagttaagtttctcctattctccagattgatgatcctagccaattgtgatcctgttaacagACTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACTGGATAGTGGAGAGTACAGTTTGACATATGAAACACCAGAAGGAGTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG