1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aagcttttgaacctgatttacttggattcttttgtggcttcattgatgacatcattgtttaaagtcaatgttgatctattagctaagttccaatgtgcagGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAACGCACATTAAAG
species | Glycine max |
transcript | GLYMA10G12560.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCG GTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGTEST: gi|27425321|gb|CA936841.1|CA936841
genomic: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCGgtatgttttg ... caatgtgcagGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGT
EST: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCG GTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGTEST: gi|209712321|gb|BW668509.1|BW668509
genomic: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCGgtatgttttg ... caatgtgcagGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGT
EST: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCG GTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGEST: gi|298198460|gb|HO039999.1|HO039999
genomic: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCGgtatgttttg ... caatgtgcagGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAG
EST: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCG GTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCAGGAGAGAAGTEST: gi|15000726|gb|BI321540.1|BI321540
genomic: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCGgtatgttttg ... caatgtgcagGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGT
EST: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCG GTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGEST: gi|254329771|gb|GR839324.1|GR839324
genomic: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCGgtatgttttg ... caatgtgcagGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTG
EST: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCG GTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGT
genomic: GCCTTGGCAGCACTCTTGCTGTGATGAAGAAATCATCGAAGTTTCTACCGgtatgttttg ... caatgtgcagGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGT
atgacatcattgtttaaagtcaatgttgatctattagctaagttccaatgtgcagGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAACGCACATTAAAG
tgttgat putative branch site (score: 4)
attgtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcttttgaacctgatttacttggattcttttgtggcttcattgatgacatcattgtttaaagtcaatgttgatctattagctaagttccaatgtgcagGTCATTGGTTGGTCAATGTGGTTTTCTGAATATCTTTTCCTGGAGAGAAGTTGGGCCAAGGATGAACGCACATTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- gcttttg
- - - - - -cctgatt
- - - - - - - - - - - - - - - - - tggcttc
- - - - - - - - - - - - - - - - - - - - - -tgatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtt