1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaaattacgttcaatactttgtgcattatgttaaatgatatcttttgcaatgtgtatcttattgctatttcatgtttgttttatgtttccctgtgaatggaagggagcgaacttggtaattaaatgaatgtatgctttctcatttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA
species | Glycine max |
transcript | GLYMA10G10000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAEST: gi|9987770|gb|BE661878.1|BE661878
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCAGTGGCTGAAGATGAAATGTTCAAGGTGGTCCGTACTGGTAAAEST: gi|15813808|gb|BI786083.1|BI786083
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCGGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAEST: gi|208085267|gb|GD884055.1|GD884055
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAEST: gi|14205367|gb|BG839045.1|BG839045
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAEST: gi|208277056|gb|GE077465.1|GE077465
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCGGTGGCTGAAGATEST: gi|151397650|gb|EV267523.1|EV267523
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGAT
EST: AGCAAA-GAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAEST: gi|151408011|gb|EV277826.1|EV277826
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCGGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAEST: gi|24205496|gb|BU964749.1|BU964749
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCGGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAEST: gi|298177257|gb|HO023504.1|HO023504
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAEST: gi|14206051|gb|BG839729.1|BG839729
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
EST: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCAGTGGCTGAAAGATGAAATGTTCAAAGTGGTCCGTACTGGGTAEST: gi|9899604|gb|BE608572.1|BE608572
genomic: AGCAAAAGAGGAAGGAGAAGGCGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAA-GATGAAATGTTCAAAGTGGTCCGTACTGG-TA
EST: CGGGAAAATGGGATGTTCCTCTACCTAAG GTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
genomic: CGGGAAAATGGGATGTTCCTCTACCTAAGgtgaaattac ... atttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAA
atggaagggagcgaacttggtaattaaatgaatgtatgctttctcatttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA
tgctttctcatttctt CT-rich tract
taattaaatgaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaattacgttcaatactttgtgcattatgttaaatgatatcttttgcaatgtgtatcttattgctatttcatgtttgttttatgtttccctgtgaatggaagggagcgaacttggtaattaaatgaatgtatgctttctcatttcttcagGTACGTCCAGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGTACTGGTAAAAGAAAGA
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