Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgacacatttttaatttttcttttgtgtatgtttcttgaagtttagatatatgtagtattagagcaaaattcttacatcaaaccttgtggaatatagGGGAATTGAATCTGCTACATCTGGTGATGTGGATGGTGATATCTCTTTGCTTAAG

Basic information

species Glycine max
transcript GLYMA10G09410.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15663288|gb|BI700659.1|BI700659
EST:     GAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAA                         GGGAATTGAATCTGCTACATCTGGTGATGTGGATGGTGATATCTCTTTGCT
genomic: GAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAgtactgtgac ... tggaatatagGGGAATTGAATCTGCTACATCTGGTGATGTGGATGGTGATATCTCTTTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagatatatgtagtattagagcaaaattcttacatcaaaccttgtggaatatagGGGAATTGAATCTGCTACATCTGGTGATGTGGATGGTGATATCTCTTTGCTTAAG
                           ttcttac  putative branch site (score: 2)
     tatatgtagtatta  TA-rich tract