Sequence
atgc intronic sequence ATGC exonic sequence...attggttaacttgtgagcattctgtttattgtcattttaaatatatgtttctttatagtaatattcctgacacctctcatctttcataatctaaatacagGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGC
Basic information
species | Glycine max |
transcript | GLYMA10G07610.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------------attggttaacttgtgagcattctgtttattg-----tcattttaaatatatgtttctttatagtaatattc--ctgacacctctcatctttcataatctaaatacagGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGC
|| || || | || || ||||| | | ||| || | | | | || || |||||| ||| | | || | | | | ||||||||| || ||||||||| | ||||||||||| |||||| ||||||||||||||||| |||||||| || || |||||| ||||||| || ||||
gtatgatacaagtgattgcgaaagagcctttattttcctattttctttgctttttgtttctggaaaaacaattatagctccaaatgt-ttcgcag-aatattaggttgatgacgtggaaaatttgt--tttggtttcagGGAGTACCTGGTTGATTTAGTAGGAAAGCCAGGTCACTTATGGGAGCCTGATTCCTTGCTAAATGGTCCTTCATCTATCTCAATTTCTTCTCCTCTGCGG
upper sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 4
attggttaacttgtgagcattctgtttat-tgtcattttaaatatatgtttctttatagtaatattcctgacacctctcatctttcataatctaaatacagGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGC
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cttgtatcatatattgaattgcagtctctgtagcatgcctcatcattgaatatattagcaaactatacaaacatctcagag-tataattgtattactgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttctttatagtaatattcctgacacctctcatctttcataatctaaatacagGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGC
tttcataatctaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attggttaacttgtgagcattctgtttattgtcattttaaatatatgtttctttatagtaatattcctgacacctctcatctttcataatctaaatacagGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGC
- - - - acttgtg
- - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcctg