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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgctgtcctattttgttttttttaaacaatttctaattaccttttttcccccaccttatctttagtttatgcaaagggacaacacatgtatctttgttttgggtttttgtttttgcaagcatcagcaatatctccttgtatcttgcagTTAATGCTGAAGCAGTTCTAAAGGGTACTAATGTAGATGGTGTATACGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGA

Basic information

species Glycine max
transcript GLYMA10G07490.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07490.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0007g04160.t01 (Vitis vinifera), 3'ss of exon 5
-------------gtatgctgctgtcctattttgttttttttaaacaatttctaattac----cttttttcccccaccttatcttta-gtttatgcaaagggacaacacatg---tatct-ttgttttgggtttttgtttttgcaagcatcagcaatatctc-----cttgtatcttgcagTTAATGCTGAAGCAGTTCTAAAGGGTACTAATGTAGATGGTGTATACGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGA
               || |    | |  |  ||    ||||| |   |||   |||  |     || |||     ||||  |||    |  ||||     |  | ||   ||   ||| |  | ||||  |||| | ||| |   ||  |  ||| |||||      ||  | |  ||||||||||||||| |||||||| || ||||| |||||||||||||| || |||||||||||  || |||| ||| | || ||||||||||| |||||||| ||
gtagggtctttccccattcacagggctcacattaacctttttgattgattgaaaatgccaagttttatttaatttacctagtctgagtgcgtatgtgggtgtcccacttttgagatatgtgctcttttttgtttctatttctctcagt-tttgcattatctggaacactcttttgctgcagTTAATGCTGATGCAGTTCTCAAAGGTACCAATGTAGATGGTGTTTATGACTGCAACTCCAGAAACAATAATGTTACATTTGAGCACATTTCCTTCAGGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttttgggtttttgtttttgcaagcatcagcaatatctccttgtatcttgcagTTAATGCTGAAGCAGTTCTAAAGGGTACTAATGTAGATGGTGTATACGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGA
                                     tctccttgtatctt  CT-rich tract
          tttttgttttt  TA-rich tract