1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaaaattttggagataccttctatagtagttttcctagggaccagtattctttgtaaaagatgaaaatgtataatatactaaccgaagattgcaaactccagTTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTGAGGGTCTGGGTGTGATAGCATGTATTGGGGAACTGTTACAAGAAAGAGAAGCTGGGAAAACTTTCG
species | Glycine max |
transcript | GLYMA10G06740.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTATTCTTGGACATTCTGAGCGAAGACATGTAATTGGAGAAAATGATGAG TTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTGAGGGTCTGGGTGTGATAEST: gi|209714415|gb|BW659099.1|BW659099
genomic: TTATTCTTGGACATTCTGAGCGAAGACATGTAATTGGAGAAAATGATGAGgtgaaaattt ... caaactccagTTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTGAGGGTCTGGGTGTGATA
EST: AAGACATGTAATTGGAGAAAATGATGAG TTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTGAGGGTCTGGGTGTGATAEST: gi|7145968|gb|AW507890.1|AW507890
genomic: AAGACATGTAATTGGAGAAAATGATGAGgtgaaaattt ... caaactccagTTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTGAGGGTCTGGGTGTGATA
EST: CTTGGACATTCTGAGCGAAGACATGTAATTGGAGAAAATGATGAG TTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTGAGGGTCTGGGTGTGATAEST: gi|14205825|gb|BG839503.1|BG839503
genomic: CTTGGACATTCTGAGCGAAGACATGTAATTGGAGAAAATGATGAGgtgaaaattt ... caaactccagTTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTGAGGGTCTGGGTGTGATA
EST: GTAATTGGAGAAAATGATGAG TTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTNAGGGTCTGGGTGTGATA
genomic: GTAATTGGAGAAAATGATGAGgtgaaaattt ... caaactccagTTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTGAGGGTCTGGGTGTGATA
ttctttgtaaaagatgaaaatgtataatatactaaccgaagattgcaaactccagTTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTGAGGGTCTGGGTGTGATAGCATGTATTGGGGAACTGTTACAAGAAAGAGAAGCTGGGAAAACTTTCG
tactaac putative branch site (score: 0)
taaaagatgaaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaattttggagataccttctatagtagttttcctagggaccagtattctttgtaaaagatgaaaatgtataatatactaaccgaagattgcaaactccagTTTATAGGGAAGAAGGCTGTCTATGCTTTGAGTGAGGGTCTGGGTGTGATAGCATGTATTGGGGAACTGTTACAAGAAAGAGAAGCTGGGAAAACTTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG