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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatctaaccctccaaaatgggtggcaacctaggtaacttttttttacctagataatcttttgttgttgctcagctatttttcttgtgtatttatgcagAATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGCCATTTGGACCTCCACGACAAAGCAGAACAGATTCAGAAAGCTATCCTCA

Basic information

species Glycine max
transcript GLYMA10G06590.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G06590.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0040g01700.t01 (Vitis vinifera), 3'ss of exon 6
-------tatatctaaccctccaaaatgggtggcaacctaggtaacttttttttacctagataatcttttgttgttgctcagctatttttcttgtgtatttatgcagAATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGCCATTTGGACCTCCACGACAAAGCAGAACAGATTCAGAAAGCTATCCTCA
             |    || |   ||      |    |||     ||||  ||   |||| |||  ||| || ||||| ||  ||  ||       |||| || ||||| |||| || |||||||||||  || |||||| ||| |||||| | ||||||||| | ||||| || ||||| || ||||| ||||| || |||||||
gttacaaggagagtggttcttctctatttccttct-tttagaatggttttcattttatagaaaatgcttt-ttcttgct-agtcatgctttcc---cattt-tgtagAATATGGCAAACCCAACTGCTTTGATGTTGAGTGCTGTCACAATGCTTCGCCATTTGAAGCTCCATGATAAAGCTGACCAGATCCAGAATGCCATCCTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207829407|gb|GD804025.1|GD804025
EST:     TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAG                         A
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGgtgagctgtg ... atttatgcag-
EST: gi|207829407|gb|GD804025.1|GD804025
EST:     TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAG                         A
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGgtgagctgtg ... atttatgcag-
EST: gi|254329853|gb|GR839406.1|GR839406
EST:     TTGCACTTGCTGAGGCTGTACATGGTTCAGCA-CTGATATTGCTGGAAAG                         AATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGC
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGgtgagctgtg ... atttatgcagAATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGC
EST: gi|33390519|gb|CA853714.1|CA853714
EST:     GCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAG                         AATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGC
genomic: GCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGgtgagctgtg ... atttatgcagAATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGC
EST: gi|192329562|gb|FK022226.1|FK022226
EST:     TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAG                         AATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGC
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGgtgagctgtg ... atttatgcagAATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGC
EST: gi|192329563|gb|FK022227.1|FK022227
EST:     TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAG                         AATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGC
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGgtgagctgtg ... atttatgcagAATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGC
EST: gi|209700403|gb|BW664416.1|BW664416
EST:     TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAG                         AATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGC
genomic: TTGCACTTGCTGAGGCTGTACATGGTTCAGCACCTGATATTGCTGGAAAGgtgagctgtg ... atttatgcagAATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacctagataatcttttgttgttgctcagctatttttcttgtgtatttatgcagAATTTGGCTAATCCAACTGCTTTACTGCTGAGTGGTGTTACAATGTTGCGCCATTTGGACCTCCACGACAAAGCAGAACAGATTCAGAAAGCTATCCTCA
        ataatctttt  TA-rich tract